Simple sequence repeat variation in the Daphnia pulex genome

BMC Genomics

Table 3 Gene content vs SSR abundance, and G/C content vs SSR heterozygosity

*Table 3a: Gene content vs SSR abundance*
Motif Size
Abundance	1	2	3	4	5	6	2 to 6	Gene Content
scaffold_18								+
scaffold_32		+			+		+
scaffold_43		+					+
scaffold_58					+
scaffold_59						+
scaffold_62					+
scaffold_66					-
scaffold_67						+		+
scaffold_68	+
scaffold_74		+					+	-
scaffold_76		+		+		+
scaffold_81	+
scaffold_82	+				+			-
scaffold_84								-
scaffold_85						+
scaffold_88					+
scaffold_90			+	+
scaffold_98						-
Table 3b: G/C content vs SSR heterozygosity
Motif Size
Heterozygosity	1	2	3	4	5	6	2 to 6	G/C Content
scaffold_7						+
scaffold_18					+
scaffold_19						+
scaffold_20					+
scaffold_24				+		+
scaffold_30	+	+	+				+
scaffold_32				+
scaffold_33					+
scaffold_43		+
scaffold_63						+
scaffold_69						+
scaffold_75					+
scaffold_76		+				+	+
scaffold_77			+				+
scaffold_82								-
scaffold_90			+	+			+	+
scaffold_94				+

This table shows motif sizes that are significantly greater than (+) or less than (-) the overall scaffold mean.
Motif Sizes that are significantly different (2 standard deviations) from the overall scaffold mean using Generalized Extreme Studentized Deviate (ESD) are bolded (p < 0.05, df = 98). Column 2 to 6 is the cumulative sum of motif sizes 2 to 6 (homopolymers excluded).

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