Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera

BMC Genomics

Table 3 Differentially regulated AP2/ERF genes during ripening in the flesh tissues.

Genes up-regulated in the transition from veraison to ripe in the flesh tissues				Genes down-regulated in the transition from veraison to ripe in the flesh tissues
Name	Fold Change (log2)	S.D.	Family-Group	Name	Fold Change (log2)	S.D.	Family-Group
VvERF046	6.46	0.65	ERF-V	VvERF114	-14.37		ERF-X
VvERF118	5.31	1.87	ERF-X	VvERF146	-7.94		RAV
VvERF047	5.2	0.64	ERF-V	VvERF100	-7.3		ERF-IX
VvERF027	4.69		ERF-III	VvERF107	-6.48		ERF-IX
VvERF053	4.5	3.5	ERF-VI	VvAP2-1	-6.07		AP2
VvERF072	4.27	1.61	ERF-IX	VvERF099	-5.85	5.29	ERF-IX
VvERF071	4.14	1.66	ERF-IX	VvERF085	-5.64	2.69	ERF-IX
VvERF023	4	0.81	ERF-III	VvERF106	-5.23	0.89	ERF-IX
VvERF092	3.45	1.88	ERF-IX	VvAP2-5	-4.9		AP2
VvAP2-13	3.35	1.35	AP2	VvERF097	-4.71		ERF-IX
VvERF095	3.13	1.09	ERF-IX	VvERF010	-4.64	2.29	ERF-II
VvAP2-8	3.13	0.39	AP2	VvERF029	-4.54	4.02	ERF-III
VvAP2-3	3.05		AP2	VvERF022	-4.44	1.46	ERF-III
VvERF094	2.81	1.81	ERF-IX	VvERF111	-3.96	0.03	ERF-IX
VvERF103	2.56		ERF-IX	VvAP2-17	-3.83	1.85	AP2
VvERF045	2.47	2.23	ERF-V	VvAP2-16	-3.53		AP2
VvERF006	2.45	1.35	ERF-II	VvERF020	-3.51		ERF-III
VvAP2-12	2.3	1.74	AP2	VvERF054	-3.49	0.08	ERF-VI
				VvERF087	-3.49		ERF-IX
				VvERF079	-3.25	2.53	ERF-IX
				VvERF096	-3.16	2.47	ERF-IX
				VvERF016	-3.13	2.01	ERF-III
				VvERF05	-3.12	2.4	ERF-I
				VvERF122	-3	1.09	ERF-6-L
				VvERF117	-2.81	0.6	ERF-X
				VvERF024	-2.42	1.07	ERF-III
				VvERF040	-2.38	0.41	ERF-IV
				VvERF051	-2.34	0.96	ERF-V
				VvERF098	-2.21	1.47	ERF-IX
				VvERF018	-2.09		ERF-III

Relative mRNA levels ERF, AP2 and RAV members up- or down-regulated in the flesh tissues of the grapevine berry during transition from the veraison stage to full ripeness, quantified by RT-qPCR, according to the 2^-ΔΔCt method. The results shown are from at least three independent replicates. Expression values for which a standard deviation (SD) is not provided, correspond to samples that did not reach the selected threshold fluorescence level before the 39^th cycle in one of the two ripening stages.

ISSN: 1471-2164