Table 1 Mkrn1- and mkrn2-related retro(pseudo)genes in human and mouse genomes.
Location | Gene names | Annotation | EST support |
|---|---|---|---|
Human mkrn1 | |||
Hsa7 140.152.840-140.179.369 | MKRN1, RNF61, ENSG00000133606 | source protein-coding gene with introns | expressed in many adult tissues |
Hsa15 23.810.454-23.813.164 | MKRN3, D15S9, MGC88288, RNF63, ZFP127, ZNF127 | protein-coding retrogene | EST data for blood, brain, esophagus, liver, placenta, prostate and skin |
Hsa1 43.356.765-43.358.101 | ENSG00000237090, RP11-342M1.6, MKRNP4* | retropseudogene | no EST support |
Hsa2 153.707.170-153.707.338 | ENSG00000234932 | retropseudogene | no EST support |
Hsa3 130.647.120-130.646.607 | located in intron of ATP2C1 (ENSG00000017260), MKRNP5* | retropseudogene | no EST support |
Hsa9 99.488.172-99.489.449 | RP11-535M15.2, ENSG00000233820, makorin ring finger protein 1 pseudogene | retropseudogene | no EST support |
Hsa12 88.177.249-88.178.345 | MKRN9P MKRNP6, MKRN5, MKRN9, RNF65, ZNF127L3, ENSG00000213267 | retropseudogene | no EST support |
Hsa12 88.176.895-88.176.996 | ENSG00000237340 | retropseudogene | Hypothalamus BI457939.1 |
Hsa20 45.092.541-45.093.763 | MKRNP3, ENSG00000225849, RP5-981L23.2, DB295917.1 | retropseudogene | no EST support |
HsaX 40.693.508-40.697.060 | MKRNP5, MKRN4, ZNF127-Xp, ZNF127L1, ZNF-Xp, ENSG00000238222, OTTHUMG00000024109, | partially processed retropseudogene | no EST support |
HsaX 73.380.895-73.382.363 | MKRNP1, ZNF127-Xq, RP13-204A15.3, ENSG00000224430 | retropseudogene | no EST support |
HsaX 91.627.539-91.627.653 | inside intron of PCDH11X | retro(pseudo?)gene, very short but intact ORF | no EST support |
HsaY 5.352.120-5.352.234 | inside intron of PCDH11Y | retro(pseudo?)gene, very short but intact ORF | no EST support |
Mouse mkrn1 | |||
Mmu6 39.347.803-39.370.437 | Mkrn1, ENSMUSG00000029922, NM_018810 | source protein-coding gene with introns | widely expressed in adult tissue with strong expression in adult gonad and embryonic nervous system [ref. [30] and EST data] |
Mmu7 69.563.293-69.564.927 | Mkrn3, ENSMUSG00000070527 | protein-coding retrogene | EST data for brain, inner ear, pancreas, spinal cord and thymus |
Mmu2 27.338.749-27.339.289 | no annotation | newly annotated retropseudogene | no EST support |
Mmu3 129.843.302-129.845.025 | no annotation | retropseudogene | no EST support |
Mmu5 89.267.034-89.268.427 | Mkrn1-ps1, AC160533.6, ENSMUSG00000082389, AF494488 | retropseudogene | no EST support |
Mmu5 111.334.263-111.334.760 | AC121934.4 (ENSMUSG00000081104), OTTMUSG00000028665 | retropseudogene | no EST support |
Mmu13 77.911.041-77.911.846 | in Intron of 1110033M05Rik (ENSMUSG00000064138) | retropseudogene | no EST support |
MmuX 54.923.521-54.923.664 | RP23-435H13.3, OTTMUSG00000017520 | retropseudogene | no EST support |
Mouse mkrn2 | |||
Mmu6 115.551.979-115.568.688 | Mkrn2, ENSMUSG00000000439, C81377; 2610002L04Rik | source protein-coding gene with introns | EST data for several tissue |
Mmu10 30.093.050-30.095.334 | no annotation | retropseudogene | no EST support |
MmuX 13.504.413-13.506.637 | BX005215.13, ENSMUSG00000082736, RP23-280F9.1, OTTMUSG00000016911 | Partially processed retropseudogene (contains only 2 introns) | no EST support |
Mmu2 106.753.075-106.754.515 | no annotation | retropseudogene | no EST support |