Table 2 Comparison of No. of missing true DEGs after DB pruning. (N0 = 4, R0 = 0.0017)
From: Density based pruning for identification of differentially expressed genes from microarray data
Total Gene: 22283 | After DP-pruning | True DEG | DP missed |
|---|---|---|---|
GSE1462 | 2054 | 4 | 0 |
GSE1615_1 | 2449 | 8 | 3 |
GSE1650 | 1317 | 8 | 2 |
GSE2666_2 | 1618 | 6 | 2 |
GSE3524 | 814 | 4 | 0 |
GSE3860 | 2073 | 8 | 0 |
GSE4917 | 785 | 5 | 1 |
GSE5667_1 | 1316 | 3 | 0 |
GSE6236 | 2231 | 7 | 0 |
GSE6344 | 3127 | 19 | 0 |
GSE6740_1 | 1183 | 40 | 1 |
GSE6740_2 | 1801 | 62 | 5 |
GSE7146 | 1274 | 6 | 1 |
GSE7765 | 1607 | 13 | 1 |
GSE8441 | 978 | 9 | 1 |
GSE9499 | 1805 | 77 | 3 |
GSE9574 | 1448 | 5 | 0 |