Table 1 Gene regulations identified in the time-series expression data of yeast cell cycle.
From: Qualitative reasoning of dynamic gene regulatory interactions from gene expression data
Genes | T | T+1 | T+2 | T+3 |
|---|---|---|---|---|
CLB1 | +CLB1(T)→ -CLN2(T+1) |  |  |  |
+CLB1(T) → +SWI5(T+1) | +CLB1(T+1) → +CDC20(T+3) | +CLB1(T+2) → +CDC20(T+4) |  |  |
-CLB1(T) → -CDC20(T+1) |  |  |  |  |
CLB2 |  | + CLB2(T+1) → +SICl(T+3) | +CLB2(T+2) → +SWI4(T+5) | +CLB2(T+3) → +SWI4(T+6) |
CLB6 | +CLB6(T)→ -CLB1(T+1) | +CLB6(T+1) → -CLB1(T+2) | +CLB6(T+2)→ -CLB1(T+3) |  |
+CLB6(T) → -CLB2(T+1) | +CLB6(T+1) → -CLB2(T+2) | +CLB6(T+2)→ -CLB2(T+3) |  |  |
CLN1 | -CLN1(T) → -CLB4(T+1) | -CLN1(T+1) → -CLB4(T+2) |  |  |
CLN2 | -CLN2(T) → -SWI6(T+1) |  | -CLN2(T+2) → +SIC1(T+5) |  |
CLN3 | +CLN3(T) → +SIC1(T+1) |  |  |  |
+CLN3(T) → +CLB6(T+3) |  |  |  |  |
CDC5 | +CDC5(T) → +CDC14(T+1) | +CDC5(T+1) → +CDC14(T+2) |  | +CDC5(T+3) → +CDC20(T+5) |
+CDC5(T) → +CDC20(T+1) | +CDC5(T+1) → +CDC20(T+2) |  |  |  |
CDC14 | -CDC14(T) → +CLN1(T+1) | -CDC14(T+1) → +CLN1(T+2) | -CDC14(T+2) → +CLN1(T+3) |  |
CDC28 | +CDC28(T) → +SWI4(T+1) |  |  |  |
CDC34 |  |  | -CDC34(T+2) → +CDC34(T+5) |  |
CDC53 | + CDC53(T) → -CLN3(T+1) |  |  |  |
CDC55 | +CDC55(T) → +USV1(T+1) | +CDC55(T+1) → +USV1(T+2) | +CDC55(T+2) → +USV1(T+3) | +CDC55(T+3) → +USV1(T+5) |
|  | +CDC55(T) → +SWI5(T+1) | +CDC55(T+1) → +SWI5(T+2) | +CDC55(T+2) → +SWI5(T+3) |  |
HCM1 | +HCM1(T) → -CLB5(T+1) |  | +HCM1(T+2) → -CLB5(T+4) |  |
|  | +HCM1(T) → -CLN1(T+1) |  |  |  |
MCM1 |  | +MCM(T+1) → -MBP1(T+2) | +MCM(T+2)→ -MBP1(T+4) |  |
MEC1 | -MEC1(T) → +CBF1(T+1) |  |  | -MEC1(T+3) → +CBF1(T+5) |
MGA1 | +MGA1(T) → +CDC5(T+1) |  |  |  |
PDR3 | +PDR3(T) → +SWI5(T+1) | +PDR3(T+1) → +SWI5(T+2) | +PDR3(T+2) → +SWI5(T+3) |  |
SKP1 | -SKP1(T) → -SWI4(T+1) |  |  | -SKP1(T+3) → -MBP1(T+4) |
SKM1 | -SKM1(T) → +CLB6(T+1) | -SKM1(T+1) → +CLB6(T+2) | -SKM1(T+2) → +CLB6(T+3) | -SKM1(T+3) → +CLB6(T+4) |
SIC1 |  | -SIC1(T+1) → +SWI5(T+3) | -SIC 1(T+2) → +SWI5(T+4) | -SIC 1(T+3) → +SWI5(T+5) |
|  |  | -SIC1(T+1) → -CLN2(T+3) | -SIC 1(T+2) → -CLN2(T+4) | -SIC 1(T+3) → -CLN2(T+5) |
SWI5 | +SWI5(T) → -CLNl(T+1) | +SWI5(T+1) → -CLN1(T+2) |  | +SWI5(T+3)→ -CLN1(T+4) |
|  | -SWI5(T) → +CLB6(T+1) |  |  |  |
SWI6 |  | -SWI6(T+1) → -SKP1(T+2) |  | -SWI6(T+3) → -CDC20(T+6) |
USV1 | +USV1(T)→ -SKM1(T+1) | +USV1(T+1)→ -SKM1(T+3) |  |  |