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Table 2 Clustering results obtained from docking of withaferin A into NEMO/IKKβ complex

From: Inhibition of the NEMO/IKKβ association complex formation, a novel mechanism associated with the NF-κB activation suppression by Withania somnifera’s key metabolite withaferin A

Receptor

No. of

AutoDock clusters a, b

Cluster rankb

No. of

structures in the cluster

Lowest binding

energy of cluster

Energy range

within cluster

  

1

8

-19.33

-19.33 to -17.24

NEMO/IKKβ complex

4 (20)

2

8

-19.12

-19.12 to -16.53

  

3

3

-18.6

-18.6 to -16.99

  

4

1

-18.33

-18.33

  1. a Number of GA runs are shown in parentheses
  2. b Clustering is done with RMS tolerance of 5.0 Å