Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

BMC Genomics

Table 1 Sequence statistics of Cucurbita 454 ESTs

Library	Raw reads Number/average length	Total length	Sequence quality average	Processed reads Number/average length	Total	Sequence quality average
Zucchini MU16	407,723/252	103 Mbp	31	261,962/319	84 Mbp	32
Scallop UPV196	392,370/254	100 Mbp	31	250,789/323	81 Mbp	32
TOTAL	800,093/253	203 Mbp	31	512,751/321	165 Mbp	32

Summary of the Cucurbita pepo expressed sequences generated with two half runs of GS-FLX Titanium pyrosequencing. Statistics of raw reads and reads after processing are indicated.

ISSN: 1471-2164