A proteomics approach to decipher the molecular nature of planarian stem cells

BMC Genomics

Table 3 Summary of BLAST hits found for the analyzed candidate sequences

RefSeq candidate sequences
ACCESSION NUMBER	BLAST HOMOLOGY	E-VALUE
GU591870	Rab-11B, member RAS oncogene family	1e-79
GU591871	Rab-39, Ras-related protein	1e-23
GU591872	Rac-1, ras-related	3e-90
GU591873	Hsp40 (DnaJ)	7e-18
GU591874	Hsp60	3e-103
GU591875	Hsp70 (Mortalin-like protein)	0.0
GU591876	Hunchback-like	1e-50
GU591877	PrkC (cAMP-dependent protein kinase)	2e-57
GU562964	Smed-SmB[58]	4e-38
URFs candidate sequences
ACCESSION NUMBER	BLAST HOMOLOGY	E-VALUE
GU591864	Chaperonin containing TCP1 theta subunit	1e-51
GU591865	Splicing factor 3b subunit 1	6e-109
GU591866	TNF receptor associated factor	3e-25
GU591867	Similar to pol polyprotein	2e-32
GU591868	Unknown protein	---
GU591869	Lectin-like	4e-28

BLAST homologies to both RefSeq and URFs candidate sequences are shown. Candidate sequences coming from MASCOT predictions over the RefSeq database were mapped onto the genome draft of Schmidtea mediterranea to retrieve the specific sequences for this species. BLASTP was performed with the species-specific protein sequences against NCBI-nr in order to annotate their function accurately.

ISSN: 1471-2164