Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper

BMC Genomics

Table 5 Repertoire of cell wall degrading enzymes in xanthomonads.

Gene name	Family	Enzymatic function	Xp	Xac	Xcv	Xv	Xg	Xcc strain 33913	Xoo strain KACC
Xylanases
xyn10A	GH10	Endo-β-1,4-xylanase EC:3.2.1.8	2014	4254	4360	2337	1172	4118	4429
xyn10B			2016	4252	4358	-	-	-	4428
xyn10C			2020	4249	4355	2333	0341	4115	-
aguA	GH67	α-glucuronidase EC:3.2.1.139	4318	4227	4333	4712	2473	4102	4419
xyn51A	GH51	β-D-Arabino-furanosidase EC:3.2.1.55	0180	1286	1335	1029/1030	2303	1191	1317
xyn5A	GH5	Endo-β-1,4-xylanase EC:3.2.1.8	4682	0933/34 partial	0965	-	-	0857	3618
Glucanases
cel8A	GH8	Endo-1,4-β-D glucanase	1965	3516	3641	0432	-	-	-
cel9A	GH9		2345	2522	2704	1327	0588	2387	-
Pectate lyases
pel1A	PL1	Pectate lyase EC:4.2.2.2	3841	3562	3687	1933	4024	0645	0821
pel1B			1563	2986	3132	3512	0893	2815	-
pel1C			-	2373	2569	-	-	-	-
pel3A	PL3	Pectate lyase EC:4.2.2.2	-	2922	-	3222	2761	1219	-
pel4A	PL4	Rhamno-galacturonan lyase EC:4.2.2.-	1975	3505	3632	2592	4531	3377/78/79	1078
pel9A	PL9	Pectate lyase EC:4.2.2.2	-	-	2278	1927	1853	-	2265
pel10A	PL10	Pectate lyase EC:4.2.2.2	-	-	-	4069	5124	0122	-

Different cell wall degrading enzymes, such as xylanase, pectate lyase, glucanases, were compared for their repertoires among already sequenced xanthomonads including our draft genomes. Genes identified by their locus tags in the respective genomes.

ISSN: 1471-2164