Table 2 Predicted functions of genes present in W22703 and absent in 8081
Transporter | Contig |
|---|---|
amino acids ABC transporters | 1812, 1658§, 1393, 1802*, 1162*, 1660§, 1186, 1757 |
PTS | 1973§, 1884 |
major facilitator superfamily | 1950§, 1885 |
permeases | 1802, 1240, 1885§, 1996 |
sodium/bile acid symporter family | 1785§ |
efflux transporter, RND family | 1328 |
divalent cation transporter | 1165 |
iron complex transport system substrate-binding protein* | 1360 |
magnesium transporter | 1165 |
Bioenergetic proteins | Contig |
cytochrome-c protein | 1186, 1976§ |
nitrate reductase | 1976§ |
Conjugation/replication | Contig |
conjugation transfer protein, TraD family§ | 1170 |
MobA/MobL-like protein§ | 1170 |
type IV prepilin§ | 1170§ |
chromosome segregation ATPase | 1804 |
Metabolism | Contig |
amidase, hydantoinase/carbamoylase family protein | 1812 |
serine-pyruvate transaminase | 1812 |
serin protease | 2008 |
transferase | 1022 |
zinc-dependent protease | 1432 |
tagatose-6-phosphate metabolism | 1973 |
prolyl endopeptidase | 1967§ |
oxidoreduktase | 1963§ |
format hydrogenlyase | 1947 |
acetamidase/formamidase | 1186 |
multisensor hybrid histidine kinase | 1807 |
iron-sulfur cluster repair di-iron protein | 1794 |
GCN5-like N-acetyltransferases | 1764, 1785§ |
L-carnitine-dehydratase* | 1314 |
sucrose catabolism§ | 1240 |
glycogen phosphorylase | 1240 |
FAD-dependent pyridine-nucleotide-disulphid-oxidoreductase | 1218 |
anaerobic dimethyl-sulfoxide-reductase | 1186 |
nitrilase/cyanid-hydratase/apolipoprotein N-acyltransferase | 1186 |
thiol-disulfid exchange protein | 1976§ |
carbonic-anhydrase§ | 1116 |
purine catabolism protein | 1812 |
NAD-dependent aldehyde-dehydrogenase | 1764§ |
Cell wall biogenesis or surface proteins | Contig |
flagella gene cluster II* | 1803, 1891 |
outer membrane protease | 1116 |
small integrale membrane protein§ | 1246 |
perosamine synthetase | 1162 |
surface antigen | 1162 |
outer membrane protein | 1802, 1177 |
pertactin-like protein | 1146 |
TonB-dependent heme receptor | 1757 |
phosphatidylinositol-diacylglycerol-lyase | 1423 |
uridine-diphosphatoacetylglucosamine epimerase | 1878 |
pili biogenesis and assembly | 1847, 1393, 1882 |
cell wall-associated hydrolases | 1386§, 1192 |
integral membrane protein CcmA | 1766 |
lipopolysaccharide synthesis | 1162, 1878 |
extracellular ligand-binding receptor | 1186 |
lipoprotein | 1803 |
Defense mechanisms/toxins | Contig |
T3SS* | 1804, 1807 |
bile salt/choloylglycin hydrolase (bsh) | 1088 |
toxin-antitoxin system | 1946, 1930 |
zonula occludens-toxin | 1920 |
Rtx cluster rtxH, rtxC, rtxA | 1867§ |
autotransporter cluster | 1177 |
insecticidal toxins (TC-PAIYe) | 1579, 1975, 1854, 1855, 1856 |
small toxic polypeptide | 1810 |
hemolysin; hemolysin activator protein | 1785 |
colicin-E2/pyocin S2 immunity protein operon | 1216 |
antibiotic acetyltransferase | 1885§, 1921 |
Proteins for DNA/RNA regulation and processing | Contig |
transcriptional regulator | 1088*, 1894, 1885, 1825§, 1835§(2), 1764, 1557§, 1200§, 1171§, 1885(2) §, 1891, 1803, 1802 |
RpiR-like transcriptional regulator | 1812 |
CRP/FNR family transcriptional regulator* | 1088 |
LuxR-like transcriptional regulator | 1921 |
negative regulator of β-lactamase expression | 1384 |
response regulator receiver protein | 1367, 1186 |
methyltransferase | 1835, 1170 |
DNA topoisomerase | 1958, 1225 |
helix destabilizing protein | 1920 |
superfamily I DNA helicase | 1825 |
methionyl-tRNA-formyltransferase | 1162 |
transcription repressor | 1920 |
filamentation induced by cAMP protein Fic | 1088 |
sensor protein with MASE1 domain | 1432 |
NTP-binding protein | 1116, 1170, 1897, 1882, 1763, 1760, 1837 |
Others | Contig |
plasmid stabilisation system* | 1835 |
resolvase | 1404, 1835 |
secreted protein | 1211, 1456 |
prophage region | 1280, 1796,1920* |