Table 3 Predicted functions of genes present in 8081 and absent in W22703
Transporter | Gene |
|---|---|
copper/silver efflux system | YE3626-YE3630 |
multidrug efflux protein | YE0443 |
ABC transporter | YE0801-YE0804; YE0818-YE0821 |
sugar permease | YE2605-YE2609 |
phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) | YE1207 |
glucoside specific PTS system | YE2103-2107 |
membrane transport protein | YE2029, YE3695 |
molybdate ABC transporter permease protein | YE2912 |
cation efflux system | YE3628 |
Bioenergetic proteins | Gene |
sulfite reductase subunit protein | YE1597 |
NADH:flavin oxidoreductase/NADH oxidase family protein | YE3034 |
Conjugation/replication | Gene |
conjugal transfer protein | YE1177-YE1178 |
type 4 prepilin-like proteins leader peptide processing enzyme | YE3574 |
integrating conjugative element protein | YE3484, YE3495 |
TraG-family protein | YE3493 |
Metabolism | Gene |
chitinase | YE3576 |
lipase | YE3614 |
zinc metalloprotease | YE4052 |
hydrolase | YE0306 |
dehydrogenase/reductase | YE0341, YE1369-YE1370 |
aldo/keto reductase | YE3031 |
oxidoreductase | YE0484 |
D-serine dehydatase | YE0800 |
glycerol kinase | YE0824 |
UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor | YE3066 |
acetyltransferase | YE1087, YE2245 |
fucose isomerase fucI | YE0825 |
Cell wall biogenesis or surface proteins | Gene |
adhesin/invasin | YE0694 |
YGI-2 (putative glycolipoprotein) | YE0894-YE0912 |
type-1 fimbrial operon | YE1111-YE1114 |
type-4 pilus | YE3498-YE3506 |
ysaE (invasin) | YE3549 |
yadA | YE1873 |
lipopolysaccharide synthesis | YE3070-3087 |
lipoprotein | YE0982, YE1234-YE1236, YE1871, YE3483, YE4156 |
N-acetylglucosamine-binding protein | YE3576 (chiY), YE2830, YE3411, YE3494A |
acyl-UDP-N-acetylglucosamine O-acyltransferase, lpxA2 | YE2286 |
Defense mechanism/toxins | Gene |
high pathogenicity island HPI (Yersiniabactin) | YE2611-YE2622 |
HlyA-like hemolysin and transporter (TPS) | YE2407, YE2408 |
hemolysin | YE3454 |
hemophore | YE0125-YE0126 |
heme acquisition system | YE0123-YE0126 |
T3SS effector protein | YE2447 |
autotransporter | YE1372, YE2049 |
ccdA/ccdB, toxin/antitoxin system | YE3480-YE3481; YE2032-2033 |
bifunctional antitoxin/transcriptional repressor RelB | YE0510, YE0647 |
arsenic resistance operon | YE3364-YE3366; YE3472-YE3478 |
metal resistance protein | YE1299 |
ysa, T3SS | YE3533-YE3561 |
yst1, T2SS | YE3564-YE3575 |
iron-sulfur cluster assembly protein | YE1059 |
metallo-β-lactamase superfamily protein | YE2635 |
cytonecrosis factor-like toxin | YE2091 |
actin-ADP-ribosylating toxin | YE0115 |
antibiotic biosynthesis monooxygenase | YE0340 |
Rho-activating domain of cytotoxic necrotizing factor | YE2091 |
Proteins for DNA/RNA regulation and processing | Gene |
TCS | YE3561/YE3563; YE3578/YE3579 |
LuxR family transcription regulatory protein | YE0039, YE0343, YE1026, YE1165, YE2050-YE2051, YE3033 |
transcriptional regulatory protein | YE0826, YE4110 |
DNA-binding protein | YE1102, YE1172, YE1825, YE3496A, YE4129 |
Cro/CI family transcriptional regulator | YE1175A |
plasmid-related transcriptional repressor protein | YE1182 |
GntR-family regulatory protein | YE2670 |
DNA helicase | YE3514 |
DEAD-like helicase | YE2632 |
Others | Gene |
YGI-3, putative integrated plasmid | YE0975-YE0993 |
YGI-4, putative integrated plasmid | YE1170-YE1183 |
YAPIYe | YE3450-YE3515 |
prophage region YE98 | YE0854-YE0888 |
prophage region YE185 | YE1667-YE1693 |
prophage region YE200 | YE1799-YE1819 |
prophage region YE250 | YE2292-YE2363 |
zinc-binding protein | YE0683 |
ATP/GTP-binding protein | YE0986, YE0990, YE3513 |
plasmid stabilisation protein | YE0510A, YE1110 |
chromosome partitioning system | YE3515 |