From: Accurate and exact CNV identification from targeted high-throughput sequence data
Sample_ID | Region | Chr | Start | End | Class | Size | Call | Targeted bases | Median Ratio | Median Z-score | Median S:N | Median Sample Coverage | Median Lane Coverage |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CF175_01 | PTEN | chr10 | 89652825 | 89653723 | Deletion | 899 | DoC + Seq | 281 | 0.45 | -8.58 | 15.58 | 196 | 519 |
CF682_01 | PTEN | chr10 | 89652825 | 89653723 | Deletion | 899 | DoC + Seq | 281 | 0.51 | -8.63 | 17.04 | 148 | 522 |
CF1815_01 | BRCA2 | chr13 | 32928730 | 32955289 | Triplication | 26560a | DoC | 10560 | 1.90 | 11.16 | 12.11 | 649 | 359 |
CF804_17 | BRCA2 | chr13 | 32940522 | 32945860 | Duplication | 5339a | DoC | 1702 | 1.63 | 6.13 | 10.15 | 318.5 | 272 |
CF815_02 | BRCA2 | chr13 | 32960705 | 32960735 | Homozygous Deletion | 31 | DoC + Seq | 31 | 0b | na | 11.94 | 0 | 249 |
CF605_01 | BRCA1 | chr17 | 41200740 | 41201249 | Deletion | 510 | DoC + Seq | 419 | 0.49 | -7.79 | 14.98 | 119 | 312 |
CF456_01 | BRCA1 | chr17 | 41214000 | 41218359 | Duplication | 4360a | DoC | 2332 | 1.47 | 7.06 | 15.45 | 277 | 368 |
CF163_02 | BRCA1 | chr17 | 41219555 | 41219794 | Duplication | 240a | DoC | 240 | 0.43 | -5.26 | 9.11 | 77 | 264 |
CF499_01 | BRCA1 | chr17 | 41230471 | 41235875 | Duplication | 5405a | DoC | 4000 | 1.55 | 8.35 | 15.93 | 391 | 429 |
CF682_01 | CHEK2 | chr22 | 29092633 | 29099332 | Deletion | 6700a | DoC | 2570 | 0.50 | -8.16 | 16.21 | 108 | 388 |