Genomic insight into the common carp (Cyprinus carpio) genome by sequencing analysis of BAC-end sequences

BMC Genomics

Table 1 Sequence statistics of the BES of common carp

BAC end sequencing reads	80,448
BES ^a	75,744
BES after trimming ^b	72,789(96.1%)
Redundant BES ^c	7,069
BES after filtering redudance	65,720
Average read length (bp)	647
BES mate-pairs ^d	29,046(88.4%)
Total bases sequenced	42,522,168
Vertebrates Repeat masked bases	7,356,797(17.3%)

^a Number of sequences with phred base calling (quality score ≥ 20) with edited read length ≥50 bp
^b Number of sequences free of E. coli and vector DNA, with edited read length ≥50 bp
^c Number of sequences with 95% identity and full-length covered by selfblasting
^d Number of clones with both ends successfully sequenced

ISSN: 1471-2164