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Table 2 Summary of BES mapping

From: Genomic insight into the common carp (Cyprinus carpio) genome by sequencing analysis of BAC-end sequences

  

Number of BAC clones

Number of BES

Mate-pairs

 

29,046

 

Mapped

 

26,809

38,736

 

Paired endsa

3,133

6,266

 

Long BES pairsb

3,182

6,364

 

mate-reversec

267

534

 

Unmated

5,345

10,690

 

Singletone

14,882

14,882

Unmapped

 

2,237

4,474

  1. a. Two ends (≤ 300 kb apart) derived from the same BAC clone were mapped to the same chromosome with the same orientation.
  2. b. Two BES (>300 kb apart) in one BAC located in the same chromosome with the same orientation.
  3. c. Two BES in one BAC located in the same chromosome with the different orientation.
  4. d. Two ends from the same BAC were mapped to different chromosomes.
  5. e. Only one end in carp BAC was aligned to zebrafish chromosome.