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Table 8 Summary of BLAST analyses of BAC-End sequences of flax (Linum usitatissimu m cv CDC Bethune)

From: Physical mapping and BAC-end sequence analysis provide initial insights into the flax (Linum usitatissimum L.) genome

S. No

Database

No of BAC-End reads harbouring

regions of similarity

No of hits as proportion of total

number of BAC-End reads@(%)

Total HSP score

Proportion as % of total length

of BAC-End-sequences*

  

cutoff e-5

cutoff e-25

   

1

Flax-EST

21,532

-

26.8

5,303,617

9.7

2

NCBI-EST

17,038

-

21.2

3,349,832

6.1

3

NCBI-Protein-nr

24,962

14,288

31.1 (e-5)

17.8 (e-25)

-

-

  1. @Total number of BAC-end reads: 80,337
  2. * Total length of BAC-End sequences: 54,600,041 bp
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BMC Genomics

ISSN: 1471-2164

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