Table 1 Summary of generated Ruditapes philippinarum ESTs and assembly results with statistics describing different properties of transcriptome contig sequences available in Ruditapes philippinarum Database (compgen.bio.unipd.it/RuphiBase)
| Â | Feature | Value |
|---|---|---|
Sequences | 454 reads | 457,717 |
| Â | Sanger sequences | 5,707 |
| Â | Assembled sequences | 191,624 |
Contigs | First run of hybrid assembly | 40,477 |
| Â | Meta-contigs of second assembly | 4,990 |
| Â | Not re-assembled | 27,616 |
| Â | Total (Ruditapes philippinarum transcriptome) | 32,606 |
| Â | Mean length (bp) | 546 |
| Â | Max length (bp) | 2497 |
| Â | Mean Average quality (Phred) | 39.2 |
| Â | Mean GC% | 33.5 |