Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

Table 5 Comparison between sense and antisense probes for each probe pair

	FC < 1.5	1.5 < FC < 3	3 < FC < 10	FC > 10	TOTAL
GILLS
total	1,958	1,635	2,118	8,629	14,340
F LS < 10	1,683	1,197	1,319	4,920	9,119
10 < F LS < 100	194	296	592	2,872	3,954
100 < F LS < 1000	66	119	162	707	1,054
F LS > 1000	15	23	45	130	213
DIGESTIVE GLAND
total	2,061	1,909	2,646	8,411	15,027
F LS < 10	1,783	1,451	1,936	5,530	10,700
10 < F LS < 100	227	358	583	2,174	3,342
100 < F LS < 1000	45	84	105	583	817
F LS > 1000	6	16	22	124	168

The number of probes belonging to each Fold Change (FC) classes (FC < 1.5, 1.5 < = FC < 3, 3 < = FC < 10, FC > = 10) is reported. Probes are also distinguished according to the mean fluorescence value of the probe showing the lower signal (FLS, Fluorescence Lower Signal).

ISSN: 1471-2164