Table 1 General genomic features of AK83 and BL225C strains in comparison with Rm1021
From: Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti
| Â | Rm1021* | AK83 | BL225C |
|---|---|---|---|
Length (Mb) | 6.69 | 7.14 | 6.98 |
G+C content | 61.3% | 61.9% | 62.0% |
Coding | 86.1% | 85.6% | 84.7% |
ORFs | 6218 | 6518 | 6359 |
rRNA | 9 | 9 | 9 |
tRNA | 54 | 56 | 55 |
Chromosome (Mb) | 3.65 | 3.82 | 3.67 |
Chromid pSymB (Mb) | 1.68 | 1.68 | 1.69 |
Megaplasmid pSymA (Mb) | 1.35 | 1.31 | 1.61 |
Plasmid 1 (Mb) | NP | 0.26 | NP |
Plasmid 2 (Mb) | NP | 0.07 | NP |
ORFs with no function | 23.72% | 28.86% | 24.60% |
ORFs with no similarity (ORFan) | 3.22% | 5.63% | 3.74% |
ORFs annotated by COG | 76.28% | 71.14% | 75.40% |
ORFs annotated by Interpro | 85.70% | 82.60% | 84.29% |
ORFs annotated by GO | 66.13% | 62.44% | 64.16% |
ORFs annotated by KEGG | 55.53% | 54.88% | 54.32% |
ORFs with homology with members of Rhizobase** | 92.46% | 87.63% | 90.64% |
Putative transposases | 152 | 135 | 76 |
Putative Type III secretion systems-related proteins | 5 | 5 | 5 |
Putative Type IV secretion systems-related proteins | 4 | 8 | 7 |
Putative Two component systems-related proteins | 129 | 126 | 134 |
Putative ABC transporters-related proteins | 314 | 302 | 309 |