|  |  | LCBs present in all taxa | LCBs present in subsets of taxa |  | |||
---|---|---|---|---|---|---|---|---|
Taxon | RefSeq accession | Genome length | bp covered | % of genome | # of genes | bp covered | % of genome | locality |
Aeromonas hydrophila ATCC 7966 | NC_008570 | 4,744,448 | 1,132,632 | 23.9 | 1,096 | 1,971,555 | 41.6 | Fresh and marine [3] |
Alteromonas macleodii deep ecotype | NC_011138 | 4,412,282 | 1,209,099 | 27.4 | 1,223 | 1,607,063 | 36.4 | Mediterranean Sea [4] |
Colwellia psychrerythraea 34H | NC_003910 | 5,373,180 | 1,272,052 | 23.7 | 1,279 | 2,130,197 | 39.6 | Arctic sediments [5] |
Shewanella amazonensis SB2B | NC_008700 | 4,306,142 | 1,312,077 | 30.5 | 1,279 | 3,228,613 | 79.4 | Baltic Sea 120 m [6] |
Shewanella baltica OS223 | NC_011663 | 5,145,902 | 1,596,790 | 31.0 | 1,504 | 4,924,714 | 95.7 | |
Shewanella baltica OS155 | NC_009052 | 5,127,376 | 1,515,912 | 29.6 | 1,469 | 4,778,750 | 93.2 | |
Shewanella baltica OS185 | NC_009665 | 5,229,686 | 1,579,905 | 30.2 | 1,511 | 4,997,928 | 95.6 | |
Shewanella baltica OS195 | NC_009997 | 5,347,283 | 1,572,889 | 29.4 | 1,496 | 5,038,451 | 94.2 | |
Shewanella denitrificans OS217 | NC_007954 | 4,545,906 | 1,318,644 | 29.0 | 1,244 | 2,749,058 | 60.5 | Baltic Sea deep [10] |
Shewanella frigidimarina NCIMB 400 | NC_008345 | 4,845,257 | 1,306,074 | 27.0 | 1,253 | 3,068,494 | 63.3 | North Sea [11] |
Shewanella halifaxensis HAW-EB4 | NC_010334 | 5,226,917 | 1,469,687 | 28.1 | 1,407 | 4,727,461 | 90.4 | Nova Scotia [12] |
Shewanella loihica PV-4 | NC_009092 | 4,602,594 | 1,339,527 | 29.1 | 1,306 | 3,377,749 | 73.4 | Hawaii, USA [13] |
Shewanella oneidensis MR-1 | NC_004347 | 4,969,803 | 1,525,080 | 30.7 | 1,479 | 4,360,652 | 87.7 | Oneida Lake, USA [14] |
Shewanella pealeana ATCC 700345 | NC_009901 | 5,174,581 | 1,485,394 | 28.7 | 1,424 | 4,573,456 | 88.4 | Atlantic Ocean [15] |
Shewanella piezotolerans WP3 | NC_011566 | 5,396,476 | 1,485,147 | 27.5 | 1,482 | 4,252,921 | 78.8 | Pacific Ocean [16] |
Shewanella putrefaciens CN-32 | NC_009438 | 4,659,220 | 1,596,811 | 34.3 | 1,559 | 4,351,757 | 93.4 | |
Shewanella sediminis HAW-EB3 | NC_009831 | 5,517,674 | 1,477,164 | 26.8 | 1,391 | 4,444,654 | 80.6 | Nova Scotia [18] |
Shewanella sp. ANA-3 | NC_008577 | 4,972,204 | 1,494,516 | 30.1 | 1,394 | 4,647,695 | 93.5 | Woods Hole, USA [19] |
Shewanella sp. MR-7 | NC_008322 | 4,792,610 | 1,478,293 | 30.8 | 1,392 | 4,564,063 | 95.2 | Black Sea [14] |
Shewanella sp. MR-4 | NC_008321 | 4,706,287 | 1,478,804 | 31.4 | 1,499 | 4,567,658 | 97.1 | Black Sea [14] |
Shewanella sp. W3-18-1 | NC_008750 | 4,708,380 | 1,578,878 | 33.5 | 1,517 | 4,443,111 | 94.4 | Coastal Pacific [20] |
Shewanella woodyi ATCC 51908 | NC_010506 | 5,935,403 | 1,503,207 | 25.3 | 1,476 | 4,442,801 | 74.9 | Mediterranean Sea [21] |
# of LCBs | Â | Â | 243 | Â | Â | 3,004 | Â | Â |
alignment length | Â | Â | 3,361,015 | Â | Â | 12,456,624 | Â | Â |