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Table 1 Highest accuracy values

From: Seeds for effective oligonucleotide design

50-mer data sets

70-mer data sets

seed type

max. accuracy

weight

seed type

max. accuracy

weight

 

mean

stdev.

  

mean

stdev.

 

contiguous

0.8760

0.0011

10

contiguous

0.8822

0.0003

11

transition

0.8856

0.0013

12

transition

0.8985

0.0002

13

1-seed

0.8888

0.0017

12

1-seed

0.9009

0.0001

13

2-seed

0.9018

0.0019

13

2-seed

0.9082

0.0006

14

4-seed

0.9051

0.0014

15

4-seed

0.9138

0.0003

16

8-seed

0.9080

0.0018

16

8-seed

0.9176

0.0008

17

16-seed

0.9117

0.0013

17

16-seed

0.9191

0.0006

19

  1. The highest accuracy for each seed type is given; for the 50-mer data set in the left table and the 70-mer data set in the right table. Both the mean and standard deviation are given. The weight of the seed that achieves the highest accuracy in a given category is given in the last column.
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BMC Genomics

ISSN: 1471-2164

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