Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

Table 3 Overrepresented motifs identified in promoters of genes involved in fatty acid synthesis, and oleosin and seed storage protein accumulation.

Matrix ID	TF name	Pathway
MA1	WRI1	FA synthesis
MA5	DOF	FA synthesis
MA40	MYB	FA synthesis
MA70	GATA	FA synthesis
MA103	SORLIP5	FA synthesis
MA117	CBF (LEC1 L1L)	FA synthesis
MA97	B3-domain (ABI3/VP1)	SSP/Oleosoin
MA23	bZIP	SSP/Oleosoin

Refer to Additional File 4 for each matrix identifier (ID). The abbreviations of transcription factors (TF), promoter element, and pathway names are as follows: WRI1: WRINLKED 1; DOF: DNA binding with One Finger; SORLIP: Sequences Over-Represented in Light-Induced Promoter; CBF: CCAAT binding factor; bZIP: basic leucine zipper; FA: fatty acid; SSP: seed storage protein.

ISSN: 1471-2164