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Table 4 Association of mycelia small RNAs with ESTs and ESS.

From: Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

 

Genomea

Intergenica

Genesb

 

Read Countc

Featuresd

Read Count

Features

Read Count

Features

ESSe

26027

3725

480

-

6155

1637

   MPSS

4174

381

73

-

1173

250

MYC

3921

237

60

-

1038

154

APP

3446

144

37

-

1071

97

   SAGE

4373

268

213

-

1186

163

   CPA-sRNA

25058

3076

370

-

5681

1226

EST

23918

8258

382

-

7055

6380

EST or ESS

29290

9058

663

-

8039

6847

  1. a Small RNAs that overlap the sequence of ESS and/or ESTs at the same genome or intergenic location.
  2. b Small RNAs that map to transcriptionally (ESS and/or EST) supported gene loci.
  3. c Number of small RNAs that map to a given feature and containing ESS and/or EST transcriptional evidence.
  4. d Number of features containing ESS and/or EST evidence associated with small RNAs.
  5. e ESS (Expressed Short Sequence) are either MPSS, SAGE or CPA-sRNA.