Experiment | Comparison | Number of exons in common | Exons detected in only one of the two replicates | Kappa for detection | Detected in one replicate, RPKM > 20 in the other replicate | Kappa on a 3 level scale | Kappa on a 9 level log scale | Number of exons where disagreement is greater than 2 logs | Number of exons that disagree 1 log or more |
---|---|---|---|---|---|---|---|---|---|
c167 | TR1-TR2 | 36602 | 5154 | 0.812 | 0 | 0.854 | 0.886 | 128 | 11596 |
c167 | TR1-TR3 | 36937 | 5236 | 0.808 | 0 | 0.853 | 0.888 | 119 | 11395 |
c167 | TR1-TR4 | 37102 | 5153 | 0.810 | 0 | 0.854 | 0.887 | 111 | 11562 |
c167 | TR1-TR5 | 37037 | 5202 | 0.808 | 0 | 0.853 | 0.885 | 112 | 11686 |
c167 | TR2-TR3 | 36974 | 5208 | 0.808 | 0 | 0.855 | 0.889 | 104 | 11285 |
c167 | TR2-TR4 | 37102 | 5199 | 0.808 | 1 | 0.853 | 0.886 | 95 | 11600 |
c167 | TR2-TR5 | 37039 | 5244 | 0.807 | 2 | 0.851 | 0.884 | 102 | 11779 |
c167 | TR3-TR4 | 37514 | 5127 | 0.809 | 0 | 0.857 | 0.892 | 76 | 11026 |
c167 | TR3-TR5 | 37470 | 5134 | 0.809 | 0 | 0.856 | 0.891 | 98 | 11051 |
c167 | TR4-TR5 | 37626 | 5069 | 0.811 | 0 | 0.858 | 0.893 | 58 | 10869 |
D. mel.. | BR2:TR1-TR2 | 46123 | 4941 | 0.738 | 67 | 0.779 | 0.801 | 204 | 14972 |
D. mel.. | BR3:TR1-TR2 | 45942 | 4716 | 0.754 | 46 | 0.783 | 0.798 | 297 | 15122 |
D. mel.. | BR4:TR1-TR2 | 45310 | 4652 | 0.767 | 110 | 0.814 | 0.848 | 105 | 12206 |
D. sim. | BR1:TR1-TR2 | 43614 | 4458 | 0.797 | 343 | 0.834 | 0.861 | 317 | 14590 |
D. sim. | BR2:TR1-TR2 | 49941 | 3676 | 0.748 | 0 | 0.864 | 0.909 | 2 | 8530 |
D. sim. | BR3:TR1-TR2 | 49983 | 3690 | 0.746 | 2 | 0.861 | 0.905 | 6 | 8648 |
D. mel.. | BR2-BR3 | 45675 | 5045 | 0.739 | 62 | 0.803 | 0.843 | 58 | 11266 |
D. mel.. | BR2-BR3 | 45715 | 5003 | 0.741 | 70 | 0.776 | 0.796 | 289 | 15304 |
D. mel.. | BR2-BR3 | 46274 | 4806 | 0.744 | 41 | 0.779 | 0.797 | 271 | 15149 |
D. mel.. | BR2-BR3 | 46381 | 4630 | 0.753 | 50 | 0.815 | 0.852 | 70 | 11775 |
D. mel.. | BR3-BR4 | 45612 | 4967 | 0.748 | 84 | 0.774 | 0.787 | 444 | 15891 |
D. mel.. | BR3-BR4 | 45387 | 4869 | 0.750 | 96 | 0.773 | 0.785 | 446 | 15938 |
D. mel.. | BR3-BR4 | 45723 | 4685 | 0.759 | 88 | 0.803 | 0.831 | 176 | 13434 |
'D. mel.. | BR3-BR4 | 45450 | 4879 | 0.752 | 108 | 0.797 | 0.828 | 201 | 13718 |
D. mel.. | BR2-BR4 | 45459 | 5008 | 0.744 | 113 | 0.774 | 0.789 | 405 | 15754 |
D. mel.. | BR2-BR4 | 45200 | 5174 | 0.739 | 108 | 0.771 | 0.790 | 401 | 15808 |
D. mel.. | BR2-BR4 | 46067 | 4751 | 0.750 | 75 | 0.801 | 0.834 | 154 | 13104 |
D. mel.. | BR2-BR4 | 45846 | 4841 | 0.749 | 89 | 0.799 | 0.832 | 152 | 13312 |
D. sim. | BR1-BR2 | 45442 | 6695 | 0.645 | 362 | 0.640 | 0.654 | 4936 | 29729 |
D. sim. | BR1-BR2 | 45440 | 6855 | 0.635 | 346 | 0.640 | 0.658 | 4687 | 29659 |
D. sim. | BR1-BR2 | 45341 | 6827 | 0.639 | 395 | 0.639 | 0.654 | 4909 | 29709 |
D. sim. | BR1-BR2 | 45375 | 6915 | 0.633 | 402 | 0.640 | 0.658 | 4665 | 29629 |
D. sim. | BR1-BR3 | 45444 | 6824 | 0.637 | 326 | 0.640 | 0.655 | 4835 | 29452 |
D. sim. | BR1-BR3 | 45464 | 6772 | 0.640 | 346 | 0.642 | 0.655 | 4814 | 29486 |
D. sim. | BR1-BR3 | 45368 | 6906 | 0.634 | 355 | 0.640 | 0.656 | 4761 | 29404 |
D. sim. | BR1-BR3 | 45368 | 6894 | 0.635 | 343 | 0.640 | 0.656 | 4704 | 29438 |
D. sim. | BR2-BR3 | 49844 | 3847 | 0.737 | 1 | 0.828 | 0.865 | 104 | 12328 |
D. sim. | BR2-BR3 | 49835 | 3853 | 0.737 | 0 | 0.830 | 0.865 | 98 | 12327 |
D. sim. | BR2-BR3 | 49955 | 3781 | 0.739 | 2 | 0.829 | 0.865 | 113 | 12376 |
D. sim. | BR2-BR3 | 49891 | 3897 | 0.731 | 0 | 0.828 | 0.865 | 95 | 12413 |