Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes

Table 1 Characteristics of the INRA RT rep1.0 database.

	Number of elements	Percentage of sequence		Number of elements	Percentage of sequence
Class I elements			Class II elements
LTR retrotransposons			DNA	1	0,05
LTR/DIRS1	2	0,02	DNA/Harbinger	2	0,02
LTR/Gypsy	21	1,68	DNA/hAT	9	0,27
Non-LTR retrotransposons			DNA/hAT-Charlie	5	0,26
LINE	1	0,29	DNA/hAT-Tag1	1	0,05
LINE/I	1	0,01	DNA/hAT-Tip100	1	0,01
LINE/Jockey	3	0,05	DNA/Helitron	1	0,01
LINE/L1	6	0,14	DNA/Maverick	1	0,01
LINE/L2	19	2,18	DNA/Tc1	11	4,26
LINE/Penelope	1	0,05	DNA/TcMar-Tc1	46	24,51
LINE/Rex1	6	3,03	DNA/TcMar-Tc2	1	0,01
SINE	5	1,09	Others elements
SINE/Deu	5	0,23	Simple_repeat	22	1,19
SINE/tRNA-Lys	1	0,01	rRNA	3	0,11
SINE/5S	1	0,01	Satellite	2	0,06
SINE?	8	0,37	Unknown elements	549	19,19

Columns 1 and 4 show the name of the repeat elements. Columns 2 and 5 provide the number of repeats elements in the INRA RT rep1.0 generated in this work. Columns 3 and 6 correspond to the percentage of total base pairs masked by the corresponding repeat element.

ISSN: 1471-2164