Comparative genomics of Escherichia coli isolated from patients with inflammatory bowel disease

BMC Genomics

Table 1 Strains used in this study

E. coli strain	Relevant characteristics	Reference
Nissle 1917	Nonpathogenic probiotic isolate (O6:K5:H1)	[38]
MG1655	K-12 reference strain	[37]
LF82	Prototypic Crohn's disease isolate	[12]
p7	Ulcerative colitis isolate, active	[23]
p13	Ulcerative colitis isolate, active	[23]
p19A	Ulcerative colitis isolate, active	[23]
p19B	Ulcerative colitis isolate, active	[23]
p22	Ulcerative colitis isolate, active	[23]
p25	Ulcerative colitis isolate, active	[23]
p29	Crohn's disease isolate, active	[23]
p30	Crohn's disease isolate, active	[23]
HM95	Crohn's disease isolate	[36]
HM154	Crohn's disease isolate	[36]
HM413	Crohn's disease isolate	[36]
HM419	Crohn's disease isolate	[36]
HM580	Crohn's disease isolate	[36]
HM605	Crohn's disease isolate	[36]
HM615	Crohn's disease isolate	[36]
c1	Commensal isolate, O81:K16:H-	[23]
c2	Commensal isolate, O6:K39:H-	[23]
c3	Commensal isolate, O77:K96:H18	[23]
c4	Commensal isolate, O57, O155:K39:H19	[23]
c5	Commensal isolate, OX184:K-:H10	[23]
c6	Commensal isolate, O126:K-:H20	[23]
c14	Commensal isolate, Oru:K18:H19	[23]
c16	Commensal isolate, O1:K1:H-	[23]
c17	Commensal isolate, O101:K+:H56	[23]
p10A	Ulcerative colitis isolate, inactive eperioperiperiodperiod	[23]
p10B	Ulcerative colitis isolate, inactive	[23]
p23	Ulcerative colitis isolate, inactive	[23]
p26	Ulcerative colitis isolate, inactive	[23]
p27	Ulcerative colitis isolate, inactive	[23]
p32	Ulcerative colitis isolate, inactive	[23]
p11	Crohn's disease isolate, inactive	[23]
p15	Crohn's disease isolate, inactive	[23]
p31	Crohn's disease isolate, inactive	[23]

ISSN: 1471-2164