From: Meta-analysis of grain yield QTL identified during agricultural drought in grasses showed consensus
S. no. | MQTL | Candidate genes (no. within MQTL) | Candidate genes | Candidate genes (no. in total) |
---|---|---|---|---|
1 | MQTL1.1 | 1 | Calcineurin-related phosphoesterase-like | 14 |
2 | Â | 2 | ERECTA-like kinase 1-like | 35 |
3 | Â | 3 | Putative ankyrin-kinase | 69 |
4 | Â | 4 | Putative NAC transcription factor | 135 |
5 | Â | 5 | Putative pectin acetylesterase precursor | 139 |
6 | Â | 6 | Putative signal recognition particle | 160 |
7 | Â | 7 | QUAKING isoform 5-like | 179 |
8 | Â | 8 | Tetratricopeptide repeat (TPR)-containing protein-like | 193 |
9 | MQTL1.2 | 1 | ABC transporter subunit-like | 1 |
10 | Â | 2 | F-box domain-containing protein-like | 39 |
11 | Â | 3 | Glutaredoxin-like | 43 |
12 | Â | 4 | Leucine zipper protein-like | 51 |
13 | Â | 5 | Lustrin A-like | 52 |
14 | Â | 6 | Nodulin-like protein | 57 |
15 | Â | 7 | Ovate family protein-like | 59 |
16 | Â | 8 | Pentatricopeptide repeat (PPR)-containing protein-like | 60 |
17 | Â | 9 | Protein kinase-like | 66 |
18 | Â | 10 | Putative auxin-independent growth promoter | 76 |
19 | MQTL1.3 | 1 | Cell wall protein-like | 21 |
20 | Â | 2 | Cytochrome P450 monooxygenase | 30 |
21 | Â | 3 | F-box domain-containing protein-like | 39 |
22 | Â | 4 | hAT dimerisation domain-containing protein-like | 45 |
23 | Â | 5 | HGWP repeat-containing protein-like | 48 |
24 | Â | 6 | Leucine zipper protein-like | 51 |
25 | Â | 7 | Nucleoporin-like protein | 58 |
26 | Â | 8 | Pentatricopeptide repeat (PPR)-containing protein-like | 60 |
27 | Â | 9 | pr1-like protein | 65 |
28 | Â | 10 | Sucrose-phosphatase-like protein | 192 |
29 | Â | 11 | Zinc knuckle domain-containing protein-like | 206 |
30 | MQTL1.4 | 1 | Polyprotein-like | 64 |
31 | Â | 2 | Putative aspartic proteinase nepenthesin II | 74 |
32 | Â | 3 | Putative cytokinin oxidase | 97 |
33 | Â | 4 | Putative lectin-like receptor kinase 1:1 | 130 |
34 | Â | 5 | Putative vacuole membrane protein 1 | 172 |
35 | MQTL2.1 | 1 | Ethylene-responsive family protein-like | 37 |
36 | Â | 2 | Putative cytochrome P450 | 94 |
37 | Â | 3 | Putative DREPP2 protein | 106 |
38 | Â | 4 | Putative F-box protein | 111 |
39 | Â | 5 | Putative flavin-containing monooxygenase | 114 |
40 | Â | 6 | Putative GTP-binding protein | 120 |
41 | Â | 7 | Putative kaurene synthase | 128 |
42 | Â | 8 | Putative pentatricopeptide repeat (PPR)-containing protein | 140 |
43 | Â | 9 | Putative sugar transporter | 164 |
44 | Â | 10 | Aquaporin | 7 |
45 | MQTL2.2 | 1 | Cell wall protein | 21 |
46 | Â | 2 | Dehydration-responsive family protein-like | 33 |
47 | Â | 3 | F-box protein-like | 39 |
48 | Â | 4 | Growth-regulating factor 1-like | 44 |
49 | Â | 5 | HGWP repeat-containing protein-like | 48 |
50 | Â | 6 | Pentatricopeptide repeat (PPR)-containing protein-like | 60 |
51 | Â | 7 | Putative anther-specific protein | 70 |
52 | Â | 8 | Putative anthocyanin biosynthetic gene regulator | 72 |
53 | Â | 9 | Putative basic-helix-loop-helix transcription factor | 77 |
54 | Â | 10 | Putative cell division control protein | 85 |
55 | Â | 11 | Putative cold acclimation protein | 90 |
56 | Â | 12 | Putative CRT/DRE binding factor 1 | 93 |
57 | Â | 13 | Putative cytochrome P450 | 94 |
58 | Â | 14 | Putative growth-regulating factor 1 | 119 |
59 | Â | 15 | Putative high-mobility group protein | 124 |
60 | Â | 16 | Putative pectin methylesterase | 138 |
61 | Â | 17 | Putative photoperiod-independent early flowering | 145 |
62 | Â | 18 | Putative sexual differentiation process protein | 158 |
63 | Â | 19 | Root-specific protein | 184 |
64 | Â | 20 | Sexual differentiation process protein-like | 187 |
65 | Â | 21 | Trehalose-6-phosphate phosphatase | 194 |
66 | Â | 22 | UDP-glycosyltransferase-like | 194 |
67 | Â | 23 | Vesicle-associated membrane protein-like | 199 |
68 | Â | 24 | Zinc finger (C3HC4-type RING finger)-like | 201 |
69 | MQTL3.1 | 1 | Adapitin protein-like | 4 |
70 | Â | 2 | Cell division control protein 2-like | 18 |
71 | Â | 3 | Cyclin 2 interactor-like | 26 |
72 | Â | 4 | F-box domain-containing protein-like | 39 |
73 | Â | 5 | Flavanone 3-hydroxylase-like | 40 |
74 | Â | 6 | HGWP repeat-containing protein-like | 48 |
75 | Â | 7 | MADS-box transcription factor | 53 |
76 | Â | 8 | NAC domain-containing protein-like | 54 |
77 | Â | 9 | Photomorphogenic | 63 |
78 | Â | 10 | Putative callose synthase 1 | 81 |
79 | Â | 11 | Putative cell cycle switch protein | 84 |
80 | Â | 12 | Putative cell division control protein 2 | 86 |
81 | Â | 13 | Putative cytochrome p450 | 94 |
82 | Â | 14 | Putative dihydrodipicolinate reductase | 103 |
83 | Â | 15 | Putative dihydrofolate synthetase | 104 |
84 | MQTL3.2 | 1 | ABC transporter-like protein-like | 2 |
85 | Â | 2 | c-type cytochrome synthesis 1 | 25 |
86 | Â | 3 | Pentatricopeptide repeat (PPR)-containing protein-like | 60 |
87 | Â | 4 | Pherophorin-dz1 protein-like | 62 |
88 | Â | 5 | Putative cleavage stimulation factor subunit 1-like protein | 89 |
89 | Â | 6 | Putative cold acclimation protein | 90 |
90 | Â | 7 | Putative peroxidase | 142 |
91 | Â | 8 | Putative phytochrome C | 146 |
92 | Â | 9 | Putative prolamin | 148 |
93 | Â | 10 | Putative prolyl 4-hydroxylase | 149 |
94 | Â | 11 | Putative protein kinase SPK-2 | 150 |
95 | Â | 12 | Putative protein phosphatase 2C | 151 |
96 | Â | 13 | Putative UDP-glucose 6-dehydrogenase | 171 |
97 | Â | 14 | Putative zinc-finger protein | 177 |
98 | Â | 15 | Receptor protein kinase | 181 |
99 | Â | 16 | Senescence downregulated leo1 | 185 |
100 | MQTL4.1 | 1 | Auxin-related protein-like | 11 |
101 | Â | 2 | Cell division cycle | 20 |
102 | Â | 3 | Cytochrome c oxidase | 28 |
103 | Â | 4 | Hydroxyproline-rich glycoprotein | 49 |
104 | Â | 5 | Integral membrane transporter-like | 50 |
105 | Â | 6 | Lustrin A-like | 52 |
106 | Â | 7 | Protoporphyrinogen IX oxidase | 67 |
107 | Â | 8 | Putative calcium-binding protein | 79 |
108 | Â | 9 | Putative cell cycle checkpoint protein MAD2 homolog | 83 |
109 | Â | 10 | Putative chitinase | 88 |
110 | Â | 11 | Putative CONSTANS-like protein | 92 |
111 | Â | 12 | Putative ER33 protein | 108 |
112 | Â | 13 | Putative LRR receptor-like kinase | 131 |
113 | Â | 14 | Putative salt-tolerance protein | 154 |
114 | Â | 15 | Stress-inducible protein | 191 |
115 | Â | 16 | Zinc finger (C3HC4-type RING finger)-like protein | 202 |
116 | MQTL4.2 | 1 | ABC-1-like | 3 |
117 | Â | 2 | Auxin response factor | 9 |
118 | Â | 3 | Calcium-dependent protein kinase | 15 |
119 | Â | 4 | CCAAT-box binding factor HAP5 | 17 |
120 | Â | 5 | Cytochrome P450 monooxygenase | 29 |
121 | Â | 6 | Cytokinin-induced apoptosis inhibitor 1 | 32 |
122 | Â | 7 | Heat shock protein binding | 47 |
123 | Â | 8 | HGWP repeat-containing protein | 48 |
124 | Â | 9 | Pentatricopeptide repeat (PPR)-containing protein | 60 |
125 | Â | 10 | Pherophorin-C1 protein precursor-like | 61 |
126 | Â | 11 | Putative calcium-dependent protein kinase | 80 |
127 | Â | 12 | Putative dehydration-responsive element-binding protein | 101 |
128 | Â | 13 | Putative ethylene response factor | 109 |
129 | Â | 14 | Putative floricaula | 115 |
130 | Â | 15 | Putative flowering locus D | 116 |
131 | Â | 16 | Putative growth-regulating factor | 118 |
132 | Â | 17 | Putative IAA24 | 125 |
133 | Â | 18 | Putative inositol 1,3,4,5,6-pentakisphosphate 2-kinase | 126 |
134 | Â | 19 | Putative jasmonate O-methyltransferase | 127 |
135 | Â | 20 | Putative late embryogenesis abundant protein | 129 |
136 | Â | 21 | Putative wall-associated kinase 1 | 175 |
137 | Â | 22 | RCP1 (ROOT CAP 1)-like | 180 |
138 | Â | 23 | Stress-related-like protein interactor-like | 190 |
139 | Â | 24 | Wall-associated protein kinase-like | 200 |
140 | Â | 25 | Zinc finger (C3HC4-type RING finger)-like | 201 |
141 | MQTL8.1 | 1 | Heat shock protein | 46 |
142 | Â | 2 | Vesicle-associated membrane protein | 197 |
143 | Â | 3 | Auxin efflux carrier protein-like | 8 |
144 | Â | 4 | Cell division control protein-like | 19 |
145 | Â | 5 | Cellulose synthase-1-like protein | 22 |
146 | Â | 6 | CLAVATA1 receptor kinase (CLV1)-like protein | 23 |
147 | Â | 7 | CONSTANS-like protein | 24 |
148 | Â | 8 | Cytochrome b5-like | 27 |
149 | Â | 9 | Ethylene-responsive elongation factor EF-Ts precursor-like | 36 |
150 | Â | 10 | F-box domain-containing protein-like | 39 |
151 | Â | 11 | Germin protein type 1 | 42 |
152 | Â | 12 | HGWP repeat-containing protein-like | 49 |
153 | Â | 13 | NAC2 protein-like | 55 |
154 | Â | 14 | Nam-like protein | 56 |
155 | Â | 15 | Nodulin-like protein | 57 |
156 | Â | 16 | Pentatricopeptide repeat (PPR)-containing protein-like | 60 |
157 | Â | 17 | Polyprotein-like protein | 64 |
158 | Â | 18 | Putative ABC transporter | 68 |
159 | Â | 19 | Putative anthocyanin 5-aromatic acyltransferase | 71 |
160 | Â | 20 | Putative AP2/EREBP transcription factor LEAFY PETIOLE | 73 |
161 | Â | 21 | Putative CCAAT box binding factor/transcription factor Hap2a | 82 |
162 | Â | 22 | Putative chaperone GrpE | 87 |
163 | Â | 23 | Putative cold shock protein-1 | 91 |
164 | Â | 24 | Putative cytokinin-regulated kinase 1 | 98 |
165 | Â | 25 | Putative death receptor interacting protein | 99 |
166 | Â | 26 | Putative DEFECTIVE IN ANTHER DEHISCENCE1 | 100 |
167 | Â | 27 | Putative farnesylated protein | 110 |
168 | Â | 28 | Putative fertility restorer homolog | 113 |
169 | Â | 29 | Putative MADS-box protein | 132 |
170 | Â | 30 | Putative male fertility protein | 133 |
171 | Â | 31 | Putative nucleoporin | 137 |
172 | Â | 32 | Putative pherophorin | 143 |
173 | Â | 33 | Putative senescence-associated protein | 155 |
174 | Â | 34 | Putative osmatic embryogenesis receptor-like kinase 1 | 178 |
175 | Â | 35 | Putative sexual differentiation process protein isp4 | 159 |
176 | Â | 36 | Putative starch synthase | 161 |
177 | Â | 37 | Putative stress-responsive gene | 162 |
178 | Â | 38 | Putative teosinte branched1 protein | 166 |
179 | Â | 39 | Putative trehalose-6-phosphate synthase | 170 |
180 | Â | 40 | Putative vesicle-associated membrane associated protein | 173 |
181 | Â | 41 | Putative wall-associated kinase | 174 |
182 | Â | 42 | Ripening-related protein-like | 182 |
183 | Â | 43 | Root cap protein 1-like | 183 |
184 | Â | 44 | Senescence-associated protein-like | 186 |
185 | Â | 45 | Stress-inducible protein-like | 189 |
186 | Â | 46 | Zinc finger-like protein | 204 |
187 | MQTL8.2 | 1 | AP2 domain transcription factor-like | 6 |
188 | Â | 2 | Auxin-induced protein-related-like protein | 10 |
189 | Â | 3 | F-box protein family-like protein | 39 |
190 | Â | 4 | Pentatricopeptide repeat (PPR)-containing protein-like | 60 |
191 | Â | 5 | Putative calcineurin B subunit | 78 |
192 | Â | 6 | Putative cytochrome P450 monooxygenase | 95 |
193 | Â | 7 | Putative male fertility protein | 133 |
194 | Â | 8 | Putative NAC domain protein | 134 |
195 | Â | 9 | Putative senescence-associated protein | 155 |
196 | Â | 10 | Putative stromal cell-derived factor 2 precursor | 163 |
197 | Â | 11 | Putative temperature stress-induced lipocalin | 165 |
198 | Â | 12 | Putative teosinte branched1 protein | 166 |
199 | Â | 13 | Putative tethering factor | 167 |
200 | Â | 14 | Putative trehalose-6-phosphate synthase | 170 |
201 | Â | 15 | Somatic embryogenesis receptor kinase-like protein | 188 |
202 | Â | 16 | Zinc finger protein-like | 204 |
203 | MQTL10.1 | 1 | Aminotransferase-like | 5 |
204 | Â | 2 | Putative gibberellin-regulated protein | 117 |
205 | Â | 3 | Putative peptide transporter 1 | 141 |
206 | Â | 4 | Putative serine threonine kinase | 157 |
207 | Â | 5 | Putative wall-associated kinase 4 | 176 |
208 | Â | 6 | ABC transporter-like | 1 |
209 | MQTL10.2 | 1 | Calcineurin B-like protein | 13 |
210 | Â | 2 | Calcium-dependent protein kinase, isoform 1 (CDPK 1) | 16 |
211 | Â | 3 | Cytochrome p450-like | 31 |
212 | Â | 4 | Dehydration-responsive family protein-like | 33 |
213 | Â | 5 | Elicitor-like protein | 34 |
214 | Â | 6 | Ethylene-responsive protein-like | 38 |
215 | Â | 7 | F-box protein-like | 39 |
216 | Â | 8 | Fringe-related protein-like | 41 |
217 | Â | 9 | Pentatricopeptide repeat (PPR)-containing protein-like | 60 |
218 | Â | 10 | Putative anther-specific protein | 70 |
219 | Â | 11 | Putative auxin response factor 10 | 75 |
220 | Â | 12 | Putative cytokinin dehydrogenase | 96 |
221 | Â | 13 | Putative DEFECTIVE IN ANTHER DEHISCENCE1 | 100 |
222 | Â | 14 | Putative dehydration-induced protein | 102 |
223 | Â | 15 | Putative DRE binding factor 2 | 105 |
224 | Â | 16 | Putative drought-inducible protein | 107 |
225 | Â | 17 | Putative fertility restorer | 112 |
226 | Â | 18 | Putative hairy meristem | 121 |
227 | Â | 19 | Putative heat shock factor RHSF5 | 122 |
228 | Â | 20 | Putative hexose carrier protein HEX6 | 123 |
229 | Â | 21 | Putative NAM (no apical meristem) gene | 136 |
230 | Â | 22 | Putative pollen-specific kinase partner protein | 147 |
231 | Â | 23 | Putative root cap-specific glycine-rich protein | 152 |
232 | Â | 24 | Putative salt-induced MAP kinase 1 | 153 |
233 | Â | 25 | Putative senescence-associated protein DH | 156 |
234 | Â | 26 | Putative tonoplast membrane integral protein | 168 |
235 | Â | 27 | Putative trehalose-6-phosphate phosphatase | 169 |
236 | Â | 28 | Putative zinc finger protein | 177 |
237 | Â | 29 | Ripening-related protein-like | 182 |
238 | Â | 30 | Senescence-associated protein-like | 186 |
239 | Â | 31 | Stress-inducible protein-like | 189 |
240 | Â | 32 | Tetratricopeptide repeat (TPR)-containing protein-like | 193 |
241 | Â | 33 | Universal stress protein-like | 195 |
242 | . | 34 | Vacuolar protein-sorting 13C protein-like | 196 |
243 | Â | 35 | Vesicle-associated membrane associated protein-like | 198 |
244 | Â | 36 | Zinc finger (HIT type)-like | 203 |
245 | MQTL12.1 | 1 | Calcineurin B-like | 12 |
246 | Â | 2 | Cell wall protein-like | 21 |
247 | Â | 3 | HGWP repeat-containing protein-like | 48 |
248 | Â | 4 | Hydroxyproline-rich glycoprotein-like | 49 |
249 | Â | 5 | Putative pherophorin-dz1 protein | 144 |
250 | Â | 6 | Zinc knuckle-containing protein-like | 205 |