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Table 2 Conserved terminal nucleotide sequences and percent sequence identities of genome segments and proteins between SMReV and other aquareovirus and orthoreovirus species.

From: Turbot reovirus (SMReV) genome encoding a FAST protein with a non-AUG start site

  

S1

S2

S3

S4

S5

S6

S7

S8

S9

S10

S11

Conserved terminal nucleotide sequences

  

nt

aa

nt

aa

nt

aa

nt

aa

nt

aa

nt

 

nt

aa

nt

aa

nt

aa

nt

aa

nt

aa

 

AQRV-A

CHSRV

74

84

79

93

79

85

-

-

72

80

75

85

74

61,50

79

88

78

85

71

76

83

-

5'-GUUUUA......UCAUC-3'

 

TFRV

-

-

-

-

-

-

-

-

-

-

77

91

-

-

-

-

-

-

77

84

84

86

5'-GUUUUA......UCAUC-3'

 

SBRV

-

-

-

-

-

-

-

-

-

-

-

-

-

-

78

86

-

-

77

84

-

-

5'-GUUUUA......UCAUC-3'

 

ASRV-TS

-

-

79

94

-

-

-

-

-

-

-

-

-

-

-

-

-

-

73

78

-

-

5'-GUUUUA......UCAUC-3'

 

ASRV-2009

-

-

-

-

-

-

-

-

-

-

-

-

78

73,76

-

-

-

-

77

84

-

-

5'-GUUUUA......UCAUC-3'

AQRV-C

GCRV-873

55

44

60

59

57

52

13

26

17

35

57

53

3

23,20

36

44

54

41

5

13

3

19

5'-GUUAUU......UCAUC-3'

 

GSRV

56

44

60

59

58

52

13

26

17

35

60

53

3

25,21

38

45

54

41

5

13

5

20

5'-GUUAUU......UCAUC-3'

AQRV-G

AGCRV

52

44

60

58

57

53

13

23

10

35

56

51

5

21,26

38

40

25

37

8

17

7

23

5'-GUUUUA......UCAUC-3'

 

GCRV-HZ08

6

30

37

42

9

34

-

-

2

22

4

29

-

-

-

-

-

-

-

-

-

-

5'-GUAAUU......UCAUC-3'

Orthoreovirus

MRV-1

5

25

28

40

7

31

2

12

2

17

3

25

2

NE,8

2

22

2

11

3

8

NE

NE

5'-GCUA...........UCAUC-3'

 

MRV-2

3

24

24

40

3

31

1

13

2

18

4

25

2

NE,8

1

19

2

13

3

8

NE

NE

5'-GCUA...........UCAUC-3'

 

MRV-3

2

25

28

40

12

31

1

12

2

17

3

25

2

NE,4

2

20

3

11

3

8

NE

NE

5'-GCUA...........UCAUC-3'

 

ARV S1133

4

24

24

41

7

30

3

16

2

16

6

23

1

6,5

2

17

3

13

3

9

NE

NE

5'-GCUUUU.......UCAUC-3'

  1. nt: nucleotide sequence
  2. aa: amino acid sequence
  3. "-": complete sequence not available
  4. NE: no equivalent sequence
  5. Abbreviations: CHSRV: Chum salmon reovirus; TFRV: Threadfin reovirus; SBRV: Striped bass reovirus; ASRV-TS: Atlantic salmon reovirus TS; ASRV-2009: Atlantic salmon reovirus 2009; GCRV-873: Grass carp reovirus 873; GSRV: Golden shiner reovirus; AGCRV: American grass carp reovirus; GCRV-HZ08: Grass carp reovirus HZ08; MRV-1: Mammalian orthoreovirus 1; MRV-2: Mammalian orthoreovirus 2; MRV-3: Mammalian orthoreovirus 3; ARV S1133: Avian orthoreovirus S1133