Table 2 Sanger Sequence Calls vs. Maq
From: Exome-wide DNA capture and next generation sequencing in domestic and wild species
sample | chrom | sanger start | sanger stop | position | reference | sanger | maq | gene |
bison | chr6 | 88531917 | 88532399 | 88532280 | A | G | G | CSN3 |
bison | chr6 | 88531917 | 88532399 | 88532296 | T | C | C | CSN3 |
zebu | chr6 | 88531917 | 88532399 | 88532296 | T | Y | Y | CSN3 |
zebu | chr6 | 88531917 | 88532399 | 88532332 | C | M | M | CSN3 |
zebu | chr6 | 88531917 | 88532399 | 88532339 | A | R | R | CSN3 |
zebu | chr6 | 88531917 | 88532399 | 88532393 | G | R | R | CSN3 |
taurine | chr6 | 88531917 | 88532399 | 88532293 | C | C | Y | CSN3 |
taurine | chr6 | 88531917 | 88532399 | 88532296 | T | T | C | CSN3 |
taurine | chr6 | 88531917 | 88532399 | 88532393 | G | G | A | CSN3 |
bison | chr4 | 95689756 | 95690201 | 95690049 | T | C | C | LEPTIN |
zebu | chr4 | 95689756 | 95690201 | 95690049 | T | C | C | LEPTIN |
taurine | chr4 | 95689756 | 95690201 | 95690049 | T | C | C | LEPTIN |
bison | chr10 | 3941758 | 3942115 | 3941786 | T | C | C | TICAM2 |
bison | chr10 | 3941758 | 3942115 | 3941805 | A | G | G | TICAM2 |
bison | chr10 | 3941758 | 3942115 | 3941921 | A | G | G | TICAM2 |
bison | chr10 | 3941758 | 3942115 | 3941934 | G | A | A | TICAM2 |
bison | chr10 | 3941758 | 3942115 | 3941946 | A | G | G | TICAM2 |
zebu | chr10 | 3941758 | 3942115 | 3941921 | A | G | G | TICAM2 |
zebu | chr10 | 3941758 | 3942115 | 3941946 | A | R | R | TICAM2 |
zebu | chr10 | 3941758 | 3942115 | 3941963 | C | Y | Y | TICAM2 |
taurine | chr10 | 3941758 | 3942115 | 3941921 | A | R | R | TICAM2 |
bison | chr17 | 4284137 | 4284804 | 4284160 | T | A | A | TLR2 |
bison | chr17 | 4284137 | 4284804 | 4284210 | A | G | G | TLR2 |
bison | chr17 | 4284137 | 4284804 | 4284358 | C | Y | Y | TLR2 |
bison | chr17 | 4284137 | 4284804 | 4284655 | T | C | C | TLR2 |
bison | chr17 | 4284137 | 4284804 | 4284747 | C | T | T | TLR2 |
zebu | chr17 | 4284137 | 4284804 | 4284160 | T | W | W | TLR2 |
zebu | chr17 | 4284137 | 4284804 | 4284210 | A | G | G | TLR2 |
zebu | chr17 | 4284137 | 4284804 | 4284652 | G | K | K | TLR2 |
zebu | chr17 | 4284137 | 4284804 | 4284655 | T | Y | Y | TLR2 |
taurine | chr17 | 4284137 | 4284804 | 4284210 | A | R | R | TLR2 |
taurine | chr17 | 4284137 | 4284804 | 4284639 | G | G | R | TLR2 |
taurine | chr17 | 4284137 | 4284804 | 4284652 | G | K | K | TLR2 |
taurine | chr17 | 4284137 | 4284804 | 4284655 | T | T | Y | TLR2 |
bison | chr8 | 112427182 | 112427427 | 112427204 | C | T | T | TLR4 |
bison | chr8 | 112427182 | 112427427 | 112427213 | C | T | T | TLR4 |
bison | chr8 | 112427182 | 112427427 | 112427326 | A | C | C | TLR4 |
bison | chr8 | 112431812 | 112432152 | 112431927 | G | A | A | TLR4 |
bison | chr8 | 112434757 | 112435132 | 112435011 | A | C | C | TLR4 |
bison | chr8 | 112434757 | 112435132 | 112435120 | C | A | A | TLR4 |