Table 3 Number of MS/MS spectra assigned to different peptide sequences by algorithms
Algorithm | Number of assigned spectra | Assigned to different peptides by Mascot | Assigned to different peptides by OMSSA | Assigned to different peptides by X! Tandem | Assigned to different peptides by InsPecT |
|---|---|---|---|---|---|
Mascot | 9410 | 87 (0.92%) | 134 (1.42%) | 77 (0.82%) | 132 (1.40%) |
OMSSA | 8531 | 128 (1.50%) | 64 (0.75%) | 77 (0.90%) | 137 (1.61%) |
X! Tandem | 8820 | 76 (0.86%) | 76 (0.86%) | 26 (0.29%) | 116 (1.32%) |
InsPecT | 8832 | 132 (1.49%) | 134 (1.52%) | 116 (1.31%) | 93 (1.05%) |