Table 3 Putative phenylpropanoid/flavonoid gene sets upregulated more than 2-fold in the seed coats of black (iRT) soybean compared to the brown (irT) isolinea,b.
| Â | Â | Â | Â | Â | SAM | |
|---|---|---|---|---|---|---|
Gene Family | Probe Sets | Name | Target Description | Black/brown fold change | P-value | d-score |
Phenyl-propanoid/Flavonoid pathway | GmaAffx.80720.1.S1_at | DFR2* | Dihydroflavonol-4-reductase | 62.45 | 0.000002 | 24.70 |
| Â | GmaAffx.42116.1.S1_at | CHS4*/CHS5* | Chalcone synthase (LOC732575) | 10.99 | 0.000020 | 8.45 |
| Â | GmaAffx.42116.1.S1_x_at | Â | Â | 8.06 | 0.000026 | 7.124398 |
| Â | Gma.1163.1.S1_at | ANS2*/ANS3* | Anthocyanidin synthase | 6.77 | 0.000018 | 8.77 |
|  | Gma.17141.1.S1_at | F3H-like | Moderately similar to A. thaliana putative flavonone 3-β-hydroxylase clone U20744 (74%) | 6.43 | 0.004849 | 2.03 |
| Â | Gma.7423.2.S1_a_at | 4CL-like | 4-coumarate-CoA ligase-like protein | 2.80 | 0.005815 | 1.96 |
| Â | Gma.5621.1.S1_at | G4DT* | Pterocarpan 4-dimethylallyltransferase | 2.36 | 0.009232 | 1.80 |
| Â | Gma.8472.1.S1_at | 4CL2* | 4-Coumarate-CoA ligase 2 | 2.27 | 0.000108 | 4.60 |
Glycosyl-transferase | GmaAffx.71999.1.S1_at | UGT78K2 | Glycosyltransferase | 3.09 | 0.000124 | 4.50 |
| Â | Gma.1002.2.S1_at | UGT78K1* | UDP-glucose:flavonoid 3-O-glucosyltransferase | 2.81 | 0.000229 | 4.03 |
O-methyl-transferase | Gma.9647.1.S1_at | OMT-like | O-methyltransferase, putative | 2.58 | 0.000098 | 4.74 |
| Â | GmaAffx.57777.1.S1_at | OMT5 | Caffeoyl-CoA O-methyltransferase 5 | 2.48 | 0.000157 | 4.33 |
Glutathione S-transferase | GmaAffx.71212.1.A1_at | GST26 | Glutathione S-transferase | 234.11 | 0.000003 | 21.22 |
| Â | Gma.5139.1.S1_at | GST21 | Glutathione S-transferase | 2.05 | 0.000656 | 3.09 |