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Table 4 Evaluation of SNP primer pairs in four carrot genetic stocks used to develop the EST library

From: De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity

PCR results

Number of primers

Percentage of all primer tested

Percentage of amplified primer

Percentage of amplified and sequenced primers

SNP

    

Tested

354

-

-

-

Amplified

311

88

-

-

Single product

272

77

87

-

   Single expected product

162

46

52

-

   Single larger product

110

31

35

-

Multiple product

39

11

13

-

Sequenced*

258

73

83

-

Polymorphic

212

60

68

82

  1. *Considering 162 single expected product and 96 single larger product whit amplicon size <500 nt