Table 4 Best quality miRNA targets identified in melon unigenes
From: Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing
miRNA annotation | Unigene | Score (miRanda) | Score (TargetFinder) | Unigene annotation |
|---|---|---|---|---|
miR390|a, b | c15d_05-D02-M13R_c | 362 | 2.5 | non-annotated unigene |
miR390|a, b | c15d_05-D02-M13R_c | 362 | 4 | non-annotated unigene |
miR390|a, b | c15d_21-G08-M13R_c | 362 | 2.5 | non-annotated unigene |
miR390|a, b | c15d_21-G08-M13R_c | 362 | 4 | non-annotated unigene |
miR391|a | cCL286Contig1 | 325 | -- | histone H1, putative |
miR164|a, b | cA_04-D07-M13R_c | 319 | -- | non-annotated unigene |
miR390|a, b | cCL384Contig1 | 316 | -- | ATSK11, SK 11ATSK11; protein kinase/protein serine/threonine kinase |
miR391|a | cPSI_29-G09-M13R_c | 313 | -- | UVR8UVR8 (UVB-RESISTANCE 8); chromatin binding/guanyl-nucleotide exchange factor |
miR167|d | cCL1653Contig1 | 200 | -- | non-annotated unigene |
miR167|d | cCL2516Contig1 | 200 | -- | non-annotated unigene |
miR167|a, b | cCL1653Contig1 | 195 | 1 | non-annotated unigene |
miR167|a, b | cCL2516Contig1 | 195 | 0 | non-annotated unigene |
miR168|a, b | c46d_19-A03-M13R_c | 195 | 0 | non-annotated unigene |
miR171|a | cHS_39-C12-M13R_c | 195 | 0 | scarecrow-like transcription factor 6 (SCL6) |
miR397|a | c15d_32-E08-M13R_c | 195 | 0 | potential miR397a precursor |
miR160|a, b, c | cCL5073Contig1 | 191 | 0.5 | ARF17ARF17 (AUXIN RESPONSE FACTOR 17); transcription factor |
miR164|a, b | cPSI_18-H09-M13R_c | 190 | 3 | ANAC100, ATNAC5ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100) |
miR393|a, b | cCL3757Contig1 | 190 | 2 | AFB2AFB2 (AUXIN SIGNALING F-BOX 2); auxin binding/ubiquitin-protein ligasechr3 |
miR393|a, b | cCL4853Contig1 | 190 | 1 | TIR1TIR1 (TRANSPORT INHIBITOR RESPONSE 1); auxin binding/protein binding/ubiquitin-protein ligase |
miR408|a | cCL975Contig1 | 190 | 2.5 | ARPNARPN (PLANTACYANIN); copper ion binding/electron carrierchr2 |
miR408|a | cHS_18-D07-M13R_c | 190 | 2.5 | ARPNARPN (PLANTACYANIN); copper ion binding/electron carrierchr2 |
miR157|a, b, c | c46d_26-C05-M13R_c | 187 | 3 | SPL4SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding/transcription factor |
miR157|a, b, c | cCI_30-A09-M13R_c | 187 | 2 | SPL9SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9); transcription factor |
miR157|a, b, c | cCL2877Contig1 | 187 | 3 | SPL3SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3); DNA binding/transcription factor |
miR164|a, b | cCI_64-A04-M13R_c | 187 | 2 | NAC1, ANAC022NAC1; transcription factorchr1 |
miR170|a | cHS_39-C12-M13R_c | 187 | 1.5 | scarecrow-like transcription factor 6 (SCL6) |
miR159|a | cHS_39-F10-M13R_c | 183 | 3 | brassinosteroid signaling positive regulator-related |
miR161|a.2 | cA_16-D06-M13R_c | 183 | 3 | pentatricopeptide (PPR) repeat-containing protein |
miR169|a | cA_37-E12-M13R_c | 183 | 4 | NF-YA9NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9); specific transcriptional repressor/transcription factor |
miR156|a, b, c, d, e, f | c46d_26-C05-M13R_c | 182 | 2 | SPL4SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding/transcription factor |
miR156|a, b, c, d, e, f | cCI_30-A09-M13R_c | 182 | 1 | SPL9SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9); transcription factor |
miR156|a, b, c, d, e, f | cCL2877Contig1 | 182 | 2 | SPL3SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3); DNA binding/transcription factor |
miR157|d | c46d_26-C05-M13R_c | 182 | 3 | SPL4SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding/transcription factor |
miR157|d | cCI_30-A09-M13R_c | 182 | 2 | SPL9SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9); transcription factor |
miR157|d | cCL2877Contig1 | 182 | 3 | SPL3SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3); DNA binding/transcription factor |
miR319|a, b | c15d_24-H05-M13R_c | 182 | 4 | potential miR319|a, b precursor |
miR167|d_melon | cCL1653Contig1 | -- | 0 | non-annotated unigene |
miR167|d_melon | cCL2516Contig1 | -- | 0.5 | non-annotated unigene |
miR172|e | c15d_13-C08-M13R_c | -- | 2 | non-annotated unigene |
miR172|e | cA_04-D07-M13R_c | -- | 2 | non-annotated unigene |
miR167|a, b | cCL2288Contig1 | -- | 2.5 | unknown protein |
miR156|a, b, c, d, e, f | cCL5542Contig1 | 173 | 2.5 | kelch repeat-containing F-box family protein |
miR157|a, b, c | cCL2547Contig1 | 175 | 2.5 | unknown protein |
miR164|a, b | cCL2655Contig1 | 175 | 2.5 | non-annotated unigene |