Table 1 Correlation and partial correlation between log(ω) and various protein attributes
From: The non-random clustering of non-synonymous substitutions and its relationship to evolutionary rate
Attribute (X) | N | rlog(ω), X (p-value) | rlog(ρ), X (p-value) | rlog(ω), log(ρ)|X (p-value) | Reference |
|---|---|---|---|---|---|
log( ρ ) | 2,897 | 0.40077295 (0) | - | - | |
mRNA expression | 2,701 | -0.3807253 (6.7e-94) | -0.2072764 (1.34e-27) | 0.3558986 (0) | [20] |
Protein abundance | 1,930 | -0.3878717 (2.572e-70) | -0.1586315 (2.4e-12) | 0.3727785 (0) | [21] |
Codon adaptation index 1 | 2,895 | -0.3741477 (7.23e-97) | -0.1898758 (6.63e-25) | 0.3621437 (0) | [22] |
Codon adaptation index 2 | 2,643 | -0.4055142 (3.568e-105) | -0.2027786 (6.31e-26) | 0.3558753 (0) | [23] |
Dispensibility 1 | 1,562 | 0.1832102 (2.94e-13) | 0.09173406 (0.000283) | 0.3922312 (0) | [24] |
Dispensibility 2 | 49 | -0.2296285 (0.1124) | 0.01099192 (0.94025) | 0.4143947 (0.00201) | [25] |
Sequence Length | 2,895 | -0.01921694 (0.301313) | -0.01095773 (0.5556) | 0.4006604 (0) | [26] |
Degree | 674 | -0.1502817 (8.98e-5) | -0.0850535 (0.02724) | 0.3938752 (0) | [27] |
Centrality | 674 | -0.0193294 (0.616415) | -0.03150676 (0.414129) | 0.4004375 (0) | [27] |
Contact density | 84 | 0.1411473 (0.2003) | 0.05072567 (0.646781) | 0.3981061 (9.39e-5) | [28] |
Fraction buried 25% | 84 | 0.2146396 (0.04992) | 0.184923 (0.09218) | 0.3761856 (0.000258) | [28] |
SS (helix) | 84 | -0.1465735 (0.18337) | 0.01745651 (0.8748) | 0.4077974 (5.8299e-5) | [28] |
SS (strand) | 84 | 0.05027238 (0.64973) | -0.05152868 (0.6416) | 0.4044114 (6.90152e-5) | [28] |
SS (turn) | 84 | 0.07785531 (0.48147) | -0.05314373 (0.6311) | 0.406718 (6.1537e-5) | [28] |
SS (coil) | 84 | -0.2148053 (0.04973) | -0.02548217 (0.818) | 0.4048788 (6.743566e-5) | [28] |