BMC Genomics

Table 3 MEME motifs found in ECF sigma factors

From: Whole-genome phylogenies of the family Bacillaceae and expansion of the sigma factor gene family in the Bacillus cereus species-group

ECF Locus Tag	1	2	3	4	5	6	7	Orthologous BSU locus tag
BAS0964	+					+	+
BAS2285	+			+	+		+
BAS3082	+					+	+	BSU09520 (SigM)
	+				+	+	+	BSU27120 (SigV)
	+				+	+	+	BSU01730 (SigW)
	+				+	+	+	BSU23100 (SigX)
	+				+	+	+	BSU38700 (SigY)
	+				+	+	+	BSU26840 (SigZ)
	+				+	+	+	BSU14730 (YlaC)
BAS0171	+					+	+
BAS0613	+				+		+
BAS1035	+				+	+	+
BAS1626					+		+
BAS1658	+				+	+	+
BAS1966	+				+	+
BAS2323	+				+	+	+
BAS2545	+				+		+
BAS2600					+	+	+
BAS2758	+				+	+	+
BAS3383					+	+	+
BAS4558	+				+	+	+
BAS5212	+				+	+	+
BALH_4199	+				+	+	+
BCAH187_A3458				+	+
BCAH820_1326							+
BCE_1118	+				+	+	+
BCE_5322					+	+	+
Bcer98_3970					+		+
BcerKBAB4_3133	+				+
BcerKBAB4_4716	+				+	+	+
BcerKBAB4_5577	+				+	+
BCQ_1681					+		+

A '+' designates the presence of a motif in the ECF sigma factor gene at the left. MEME motifs are presented here for a representative (from the BAS genome where available; otherwise as the locus tag indicates) gene for each of the ECF sigma factors detected by the analyses.

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ISSN: 1471-2164

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