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Table 3 Distribution of identified ESTs within each of the primary functional categories.

From: Functional categorization of unique expressed sequence tags obtained from the yeast-like growth phase of the elm pathogen Ophiostoma novo-ulmi

Functional Category

Functional Subcategory

Percent

occurrence

01 Metabolism

01.01 amino acid metabolism

19.61

 

01.02 nitrogen and sulfur metabolism

5.60

 

01.03 nucleotide metabolism

11.76

 

01.04 phosphate metabolism

2.10

 

01.05 C-compound and carbohydrate metabolism

29.83

 

01.06 lipid, fatty acid and isoprenoid metabolism

23.53

 

01.07 metabolism of vitamins, cofactors, and prosthetic groups

4.48

 

01.20 secondary metabolism

3.08

02 Energy

02.07 pentose-phosphate pathway

0.63

 

02.10 tricarboxylic-acid pathway (citrate, Krebs and TCA cycles)

9.43

 

02.11 elect. trans. and mem.-associated energy conservation

2.52

 

02.13 respiration

60.38

 

02.16 fermentation

11.32

 

02.19 metabolism of energy reserves (e.g. glycogen, trehalose)

5.03

 

02.45 energy conversion and regeneration

10.69

11 Transcription

11.02 RNA synthesis

86.25

 

11.04 RNA processing

11.00

 

11.06 RNA modification

2.75

12 Protein synthesis

12.01 ribosome biogenesis

77.31

 

12.04 translation

20.45

 

12.10 aminoacyl-tRNA-synthetases

2.24

20 Cellular transport, transport facilitation and transport routes

20.01 transported compounds (substrates)

39.27

 

20.03 transport facilitation

11.42

 

20.09 transport routes

49.32

32 Cellular rescue, defense and virulence

32.01 stress response

43.32

 

32.05 disease, virulence and defense

15.51

 

32.07 detoxification

41.18

42 Biogenesis of cellular components

42.01 cell wall

29.97

 

42.02 eukaryotic plasma membrane

1.39

 

42.03 cytoplasm

40.77

 

42.04 cytoskeleton

7.67

 

42.07 endoplasmic reticulum

0.35

 

42.10 nucleus

3.14

 

42.16 mitochondrion

9.76

 

42.19 peroxisome

3.83

 

42.25 vacuole or lysosome

1.74

 

42.27 extracellular/secretion proteins

1.39

70 Subcellular localization

70.01 cell wall

12.36

 

70.02 eukaryotic plasma membrane/membrane attached

20.51

 

70.03 cytoplasm

30.90

 

70.04 cytoskeleton

1.12

 

70.07 endoplasmic reticulum

23.88

 

70.10 nucleus

11.24

 

70.25 vacuole or lysosome

1.12

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BMC Genomics

ISSN: 1471-2164

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