BMC Genomics

Table 4 Correlation between the recombination sites and particular repeats

From: Analysis of human meiotic recombination events with a parent-sibling tracing approach

		Paternal		Maternal		Both
Repeat	Number	Corr	P	Corr.	P	Corr.	P
SINE/MIR	510580	0.22	1E-16	0.30	1E-16	0.29	1E-16
DNA/hAT-Charlie	214901	0.18	1E-16	0.31	1E-16	0.29	1E-16
DNA/hAT	10624	0.16	3E-13	0.24	1E-16	0.23	1E-16
LINE/L2	397294	0.16	3E-13	0.22	1E-16	0.21	1E-16
SINE/Alu	926299	0.10	1E-04	0.22	1E-16	0.19	1E-16
DNA/hAT-Tip100	26087	0.10	3E-05	0.20	1E-16	0.18	1E-16
DNA/hAT-Blackjack	17019	0.15	4E-12	0.16	2E-13	0.17	1E-16
Simple_repeat	343474	0.19	1E-16	0.11	4E-06	0.16	8E-14
LINE/CR1	52244	0.09	4E-04	0.15	5E-12	0.13	9E-09
DNA/TcMar-Tc2	6979	0.11	1E-05	0.13	3E-08	0.13	3E-08
DNA/TcMar-Mariner	14046	0.10	5E-05	0.13	2E-08	0.12	2E-07
CpG	19661	0.06	2E-01	0.10	3E-05	0.11	1E-06
LTR/ERVL-MaLR	292520	0.11	2E-06	0.09	6E-04	0.11	8E-06
LTR/Gypsy?	6912	0.05	1	0.11	4E-06	0.08	2E-03
Unknown	6174	0.05	5E-01	0.06	4E-01	0.05	1
LINE/RTE	15421	0.04	1	0.06	2E-01	0.05	1
LTR/Gypsy	9429	0.02	1	0.04	1	0.03	1
DNA/TcMar-Tigger	87328	-0.01	1	0.04	1	0.01	1
LTR/ERVL	134989	-0.03	1	-0.03	1	-0.04	1
LTR/ERV1	139204	-0.13	7E-09	-0.10	6E-05	-0.13	2E-08
Low_complexity	314872	-0.11	3E-06	-0.17	6E-15	-0.18	1E-16
LTR/ERVK	8019	-0.19	1E-16	-0.16	3E-13	-0.19	1E-16
LINE/L1	767428	-0.16	8E-13	-0.19	1E-16	-0.20	1E-16

1. Repeat classes including more than 6000 repeats were considered for the purpose of analyses.
2. Corr.: correlation coefficients between the recombination sites and specific repeats.
3. P values under the null hypothesis of an absence of correlation. The Bonferroni's correction was applied for multiple comparisons. An adjusted P value > 1 was reported as 1.
4. The values in bold indicate a P value < 1E5

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com