Transcriptomic analysis of the interaction between Helianthus annuus and its obligate parasite Plasmopara halstedii shows single nucleotide polymorphisms in CRN sequences

Table 1 Polymorphism nucleic and amino acid site detection for 7 putative CRN observed on four P.halstedii races (100, 304, 703, and 710)

Cluster	Motif	Motif position	Aminoacid polymorphism	Aminoacid position	Nucleic acid polymorphism	SNP position
PhCRN_01	LRLFLAK	58	V/A	131	T/C	394
			Synonymous		T/C	440
			E/G	261	A/G	784
			I/F	264	A/T	792
			E/D	281	A/T	845
			M/V	441	A/G	1323
PhCRN_03	LELSLAK	56	R/K	373	A/G	1122
PhCRN_04	LELSLAK	58	Synonymous		C/T	1781
			Synonymous		A/G	1937
			T/L*	508	A/C	1953
					C/T	1954
			L/I*	519	C/A	1986
			Synonymous		A/G	2060
			A/D	558	C/A	2104
			L/P	568	T/C	2133
					T/C	2134
PhCRN_05	LQLFLAK	57	G/K	37	G/A	131
					G/A	132
			Synonymous		G/T	823
			Synonymous		A/T	946
			Synonymous		T/A	948
PhCRN_06	IELFLSK	59	Synonymous		T/C	1705
			Synonymous		G/A	1706
			Synonymous		C/T	1712
			Synonymous		G/A	1714
			Synonymous		G/A	1720
			I/T	505	T/C	1722
			E/K	506	G/A	1724
			L/T	508	C/A	1730
					T/C	1731
			L/I	519	C/A	1763
			Synonymous		C/T	1816
			Synonymous		A/G	1837
			G/C	555	G/T	1871
			A/E	558	C/A	1881
			A/T	561	G/A	1889
			Synonymous		A/G	1900
			I/F	578	A/T	1940
			A/V	579	C/T	1944
			Synonymous		A/G	1975
PhCRN_07	LKLSLAK	56	N/S	188	A/G	565
			L/W	258	T/G	775
			Synonymous		T/C	1025
PhCRN_09	LELSLAK	50	Synonymous		G/T	943
			Synonymous		A/G	1084

ISSN: 1471-2164