Table 2 Characteristics of conserved miRNA families and stem-loops in apomictic Boechera genotypes.

miR156

UGACAGAAGAGAGA GAGCAC

UGACAGAAGAGAGA GAGCAC

Ath, U/A

Ath, U/A

5'

5'

53.03

52.38

30.00

25.24

0.639

0.530

ETM6Q5C01AY29E

ET5PU7E01BE5BP

FR869781

FR869766

miR157

UUGACAGAAGAGAGAGG GCAC

Ath, A/G

5'

57.98

32.10

0.764

ET5PU7E01A5S8V

FR869768

miR159

UUUGGAC UGAAGGGAGCUCCU

Ath, U/C

-

-

-

-

ETM6Q5C02EBWUA^a

FR869788

miR160

UGCCUGGCUCCCUGUAUGCCA

Ath

5'

58.18

42.10

1.007

ET5PU7E01AQT2A

FR869776

miR161

UCAAUGCAUUGAAAGUA ACUA

Ath, G/A

-

-

-

-

ETM6Q5C01AMWRE^a

FR869779

miR162

UCGAUAAACCUCUGCAUCCAG

Ptc

3'

55.95

48.45

1.100

ETM6Q5C01AZ87O

FR869778

miR166

CCGGACCAGGCUUCAUCCCCC

Pta, A/C, G/C

-

-

-

-

ET5PU7E01CXVM2^a

FR869765

miR167

UGAAGCUGCCAGCAUGAUCUA

Ath

5'

60.00

48.20

1.205

ETM6Q5C01CA126

FR869786

miR169

UGAGCCAAGGAUGAU UUGCCU

Ath, C/U, G/U

-

-

-

-

ETM6Q5C01B8RXC^a

FR869787

miR170

UGAUUGAGCCGCGCCAAUAUC

Ath

3'

51.24

40.50

0.831

ET5PU7E01EN973

FR869761

miR172

AGAAUCUUGAUGAUGCUGCAU

Ath

3'

49.30

22.39

0.442

ET5PU7E01CV6Q5

FR869764

miR319

UUGGACUGAAGGGAGCUCCUU

Ath

3'

57.61

45.20

1.066

ETM6Q5C02EBWUA

FR869788

miR394

UUGGCAUUCUGUCA ACCUCC

Ath, C/A

3'

57.94

19.13

0.455

ET5PU7E01CBSOI

FR869772

miR395

AUGAAGA GUUUGGAGGAACUC

Osa, U/A

-

-

-

-

ETM6Q5C02DVQZ4^a

FR869794

miR396

UCCACAGGCUUUCUUGAACGG

Ghr

-

-

-

-

ETM6Q5C02DSTK1^a

FR869791

miR398

UGUGUUCUCAGGUCACCCCUU

Ath

-

-

-

-

ET5PU7E01B8LVW^a

FR869770

miR400

UAUGAGAGUAUUAUAG GUCAC

Ath, A/G

-

-

-

-

ET5PU7E01AVMRY^a

FR869771

miR408

AUGCACUGCCUCUUCCCUGGC

Ath

3'

52.81

39.55

0.838

ET5PU7E01EE6T6

FR869769

miR414

UCAUCA UCAUCAUCAUCGUCU

Ath, U/A, A/U

3'

57.69

16.92

0.400

ET5PU7E01DL36L

FR869767

UCAUCA UCAUCAUCAUCGUCG

Ath, U/A, A/G

5'

50.88

29.29

0.603

ET5PU7E01BXM22

FR869762

UCAUCG UCAUCAUCAUCGUCA

Ath, U/G

5'

63.46

29.33

0.803

ET5PU7E01D5L0P

FR869759

miR415

G ACAGAGA AGAAACAGAACAU

Ath, A/G, C/A

5'

56.30

24.96

0.571

ETM6Q5C01A4TW0

FR869780

miR472

UUUUG CCUACUCCA CCCAUACC

Ath, U/G, G/A

-

-

-

-

ETM6Q5C01B63E7^a

FR869782

miR529

CUC UU CCCUCUCUCUUCUUC

Osa, G/C, A/U

-

-

-

-

ETM6Q5C02D6DWQ^a

FR869795

miR776

UCUAAU UCUUCUAUUGAUA UU

Ath, G/U, G/A

-

-

-

-

ET5PU7E01CU8R6^a

FR869774

miR820

UCGUA CUCGUGGAUGGACCAG

Osa, G/U, C/A

-

-

-

-

ET5PU7E01CXV4L^a

FR869760

miR824

UAGACCAUUUGUGAGAAGA GA

Ath, G/A

-

-

-

-

ETM6Q5C01BUUMV^a

FR869777

miR835

UUU UUC CAUAUGUUCUUUAUC

Ath, C/U, G/C

-

-

-

-

ET5PU7E01BKF2J^a

FR869773

miR840

ACACUGAAGGAG CUG AACUAAU

Ath, C/G, A/G. C/U

-

-

-

-

ETM6Q5C02C26W5^a

FR869789

miR841

UACGAC CCACUG GAAACUGAA

Ath, G/C, U/G

-

-

-

-

ETM6Q5C01B0IVV^a

FR869785

miR846

UUGAAUUGG AGUGCUUGC AUU

Ath, A/G, A/C

-

-

-

-

ETM6Q5C02D2FL9^a

FR869793

miR854

GAUGAU GAUAGU GAGGAGGAG

Ath, G/U, G/U

-

-

-

-

ETM6Q5C01A9E26^a

FR869783

miR857

UUA UGUAUGUUGAAU GUGUAU

Ath, U/A, G/U

-

-

-

-

ETM6Q5C01AWYYJ

FR869784

miR859

UCUCUCUGUUGUGAAA UCAAA

Ath, G/A

-

-

-

-

ET5PU7E01E1HDI^a

FR869775

miR860

UCAG UAGC UUGGACUAUGUAU

Ath, A/G, A/C

-

-

-

-

ETM6Q5C02DJ9H7^a

FR869790

miR861

CCUUGGAGAAAUG UGCU UCAA

Ath, A/G, G/U

5'

51.93

31.93

0.664

ET5PU7E01A7VRK

FR869763

miR865

UUUC UCCUCAAAUUUC UCCAA

Ath, U/C, A/C

-

-

-

-

ETM6Q5C02DTC6W^a

FR869792

miR869

CAUGGUUCAAUGCA GGUGUUA

Gma, U/A

-

-

-

-

ET5PU7E01A48FH^a

FR869758