Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid

BMC Genomics

Table 2 Number of Gene Models Binned by Median Sequencing Depth Cut-off

	0x SD^a	≤ 1x SD	1x < SD ≤ 2x	2x < SD ≤ 5x	5x < SD ≤ 10x	10x < SD ≤ 50x	> 50x SD
ABA-Treated Roots	10004	5136	2026	3599	3816	7542	2022
NaOH-Treated Roots	9943	5158	2110	3625	3694	7547	2068
PEG-Treated Roots	9674	5154	1987	3620	3792	7753	2165
H₂O-Treated Roots	9925	5189	2115	3627	3673	7558	2058
ABA-Treated Shoots	10639	5695	2072	3641	3784	6424	1890
NaOH-Treated Shoots	10462	5642	2053	3553	3736	6625	2074
PEG-Treated Shoots	10033	5465	2058	3533	3776	7249	2031
H₂O-Treated Shoots	10794	5800	2060	3647	3804	6251	1789

^aSD denotes sequencing depth calculated as the total number of bases mapped to a gene (exons only) divided by total gene (exon) length.

ISSN: 1471-2164