Tandemly repeated DNA families in the mouse genome

BMC Genomics

Table 7 Unplaced family

N	Subfamily	Unit (bp)	Arrays	GC%	Length (bp)	Var%	HOR	ChrUn	WGS Chr
1	TR-24B-MM	24	3	34.4	7636	28	+	2	11
2	TR-24A-MM	24	2	45.6	3540	22	+	2	Un
3	TR-13A-MM	13	1	56.0	4477	15	+	0	6
4	TR-27B-MM	27	1	63.5	3452	36	+	1	Un
5	TR-28A-MM	28	1	41.2	3195	23	+	1	Un
6	TR-36A-MM	36	1	64.0	3003	8	+	0	19
7	TR-102A-MM	102	1	45.7	3698	31	-	0	X
8	TR-624A-MM	624	1	43.3	3297	2	-	0	Un

Subfamilies ordered by number of arrays in WGS and then by unit length. N - row index; Unit (bp) - minimal unit length; Arrays - number of arrays in WGS; GC% - mean array GC%; Length (bp) - max array length; Var% - mean variability between monomers in array. HOR - presence of HOR; ChrUn - arrays found in ChrUn; WGS Chr - chromosome source from WGS contig description.

ISSN: 1471-2164