Table 1 Summary statistics for Trialeurodes vaporariorum EST assembly and annotation
Assembly | Â |
Total number of reads | 1,104,651 |
Number of reads after pre-processing | 990,945 |
Average read length after pre-processing | 362 bp |
Total number of contigs | 54,748 |
Average contig length | 965 bp |
Sequencing length | 52,832,938 bp |
Contigs with ORF ≥200 bp (average length) | 30,552 (540 bp) |
Average read coverage per contig | 4.34x |
Average GC % content of contigs | 37.77% |
Annotation | Â |
% contigs with at least 1 GO term | 30.01% |
% contigs with an EC number | 6.10% |
% contigs with at least 1 IPR | 33.27% |
Contigs with at least 1 blast hit against nr | Â |
Total number | 20,333 |
Average length | 1,394 bp |
% of those contigs with at least 1 IPR | 42.61% |
% of those contigs with at least 1 GO term | 78.43% |
Contigs with ORF ≥200 bp (average length) | 18,080 (704 bp) |
Contigs with no blast hits | Â |
Total number | 34,416 |
Average length | 712 bp |
% of those contigs with at least 1 GO term | 1.41% |
% of those contigs with at least 1 IPR | 28.01% |
Contigs with ORF ≥200 bp (average length) | 12,472 (301 bp) |