Mining the Gene Wiki for functional genomic knowledge

BMC Genomics

Table 2 Resources used

Resource	Gathered from	Access Date
Gene Wiki Articles	http://en.wikipedia.org/w/api.php	Jan. 4, 2011
NCBO Annotator	http://www.bioontology.org/wiki/index.php/Annotator_Web_service	Jan. 12, 2011
WikiTrust	http://www.wikitrust.net	Jan. 11, 2011
OWL version of the Disease Ontology (for evaluation)	http://www.obofoundry.org/cgi-bin/detail.cgi?id=disease_ontology	Jan. 6, 2011
Disease Ontology annotations (from GeneRIF mining (Osborne et al 2009))	http://projects.bioinformatics.northwestern.edu/do_rif	Created Oct. 23, 2008. Accessed Jan. 7, 2011
OWL version of the Gene Ontology (for evaluation)	http://www.geneontology.org/GO.downloads.ontology.shtml (cvs version: $Revision: 1.1439)	Sept. 22, 2010
Gene Ontology Annotations	ftp://ftp.ncbi.nih.gov/gene/DATA/gene2go.gz (no version information provided) * we used all annotations including IEA in our analysis	Dec. 13, 2010

This table provides the name, URL, access date, and version number (when available) of the Web-based tools and databases used to conduct this study.

ISSN: 1471-2164