Table 4 Identified targets of miR156 in the rice transcriptome.
From: Employing machine learning for reliable miRNA target identification in plants
Transcript Id | Transcript annotation | Expression Correlation | SVR Score |
|---|---|---|---|
LOC_Os08g41480.1 | SAM domain containing protein, putative, expressed | -0.92 | 4.494426 |
LOC_Os10g34064.1 | retrotransposon protein, putative, unclassified | -0.92 | 3.55511 |
LOC_Os08g38240.1 | transposon protein, putative, CACTA, En/Spm sub-class, expressed | -0.89 | 0.305948 |
LOC_Os02g01250.1 | LSM domain containing protein, expressed | -0.88 | 3.846277 |
LOC_Os03g10850.2 | FAD-linked sulfhydryl oxidase ALR, putative, expressed | -0.88 | 3.9567 |
LOC_Os03g24410.1 | conserved hypothetical protein | -0.88 | 4.39943 |
LOC_Os01g66940.1 | kinase, pfkB family, putative, expressed | -0.87 | 3.55511 |
LOC_Os03g55610.1 | dof zinc finger domain containing protein, putative, expressed | -0.87 | 3.73214 |
LOC_Os04g28090.1 | MYB family transcription factor, putative, expressed | -0.87 | 3.01288 |
LOC_Os05g34730.1 | ethylene-responsive transcription factor ERF020, putative, expressed | -0.87 | 3.55511 |
LOC_Os11g04730.1 | DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed | -0.87 | 2.02559 |
LOC_Os11g37080.1 | h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed | -0.87 | 3.73214 |
LOC_Os02g12580.1 | OsPP2Ac-3 - Phosphatase 2A isoform 3 belonging to family 1, expressed | -0.86 | 0.591197 |
LOC_Os02g38200.1 | dehydrogenase, putative, expressed | -0.86 | 3.01288 |
LOC_Os02g51880.1 | amine oxidase, putative, expressed | -0.86 | 3.08791 |
LOC_Os03g55220.1 | bHelix-loop-helix transcription factor, putative, expressed | -0.86 | 1.31754 |
LOC_Os03g63730.1 | RNA recognition motif containing protein, putative, expressed | -0.86 | 0.742023 |
LOC_Os03g63730.1 | RNA recognition motif containing protein, putative, expressed | -0.86 | 2.63747 |
LOC_Os06g41384.1 | zinc finger C-x8-C-x5-C-x3-H type family protein, expressed | -0.86 | 3.08791 |
LOC_Os08g42620.1 | zinc finger DHHC domain-containing protein, putative, expressed | -0.86 | 3.01288 |
LOC_Os09g29980.2 | transposon protein, putative, CACTA, En/Spm sub-class, expressed | -0.86 | 3.01288 |
LOC_Os12g16130.1 | transposon protein, putative, unclassified, expressed | -0.86 | 0.656255 |
LOC_Os02g26140.1 | microtubule-binding protein TANGLED1, putative, expressed | -0.85 | 1.95761 |
LOC_Os06g02560.1 | growth-regulating factor, putative, expressed | -0.85 | 2.543472 |
LOC_Os10g03640.1 | hypothetical protein | -0.85 | 2.54657 |
LOC_Os10g41390.1 | protein kinase domain containing protein, expressed | -0.85 | 0.411063 |
LOC_Os12g44130.1 | expressed protein | -0.85 | 0.934949 |
LOC_Os10g41390.1 | protein kinase domain containing protein, expressed | -0.85 | 1.64854 |
LOC_Os12g09280.1 | RNA polymerase subunit, putative, expressed | -0.85 | 2.54657 |
LOC_Os01g08200.1 | ubiquitin carboxyl-terminal hydrolase 14, putative, expressed | -0.84 | 2.5038 |
LOC_Os01g50340.1 | transposon protein, putative, unclassified, expressed | -0.84 | 1.22697 |
LOC_Os03g10930.1 | ribosomal protein L51, putative, expressed | -0.84 | 0.264129 |
LOC_Os03g17950.1 | expressed protein | -0.84 | 1.17905 |
LOC_Os06g35530.1 | CGMC_GSK.8 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed | -0.84 | 0.996875 |
LOC_Os07g01540.1 | Ser/Thr protein phosphatase family protein, putative, expressed | -0.84 | 2.517799 |
LOC_Os08g02540.1 | adenylate kinase, putative, expressed | -0.84 | 2.51778 |
LOC_Os08g02730.1 | plant protein of unknown function domain containing protein, expressed | -0.84 | 1.78162 |
LOC_Os08g04780.1 | amine oxidase, putative, expressed | -0.84 | 0.111441 |
LOC_Os08g44380.1 | L1P family of ribosomal proteins domain containing protein, expressed | -0.84 | 2.54161 |
LOC_Os09g25620.1 | CPuORF8 - conserved peptide uORF-containing transcript, expressed | -0.84 | 2.08723 |
LOC_Os09g39020.1 | N-rich protein, putative, expressed | -0.84 | 1.58374 |
LOC_Os10g33230.1 | RNA recognition motif containing protein, putative, expressed | -0.84 | 1.95032 |
LOC_Os12g37380.1 | RNA pseudouridine synthase, putative, expressed | -0.84 | 2.08857 |
LOC_Os01g04730.1 | ribosomal protein L24, putative, expressed | -0.83 | 2.62583 |
LOC_Os01g09030.1 | 2-aminoethanethiol dioxygenase, putative, expressed | -0.83 | 2.63747 |
LOC_Os01g16220.1 | Sad1/UNC-like C-terminal domain containing protein, putative, expressed | -0.83 | 1.68967 |
LOC_Os01g41880.1 | hyaluronan/mRNA binding family domain containing protein, expressed | -0.83 | 2.50997 |
LOC_Os03g27990.1 | STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed | -0.83 | 2.03837 |
LOC_Os03g28410.1 | ribosomal protein S2, putative | -0.83 | 1.94684 |
LOC_Os04g30680.1 | conserved hypothetical protein | -0.83 | 1.94949 |