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Table 5 Top 20 most significant GO terms found associated with miR156 targets in the rice transcriptome.

From: Employing machine learning for reliable miRNA target identification in plants

Rank

Cellular component

Molecular Function

Biological function

 

Go Terms

Significance

(P-value)

Go Terms

Significance (P-value)

Go Terms

Significance (P-value)

1

cell wall

2.20e-16

RNA binding

2.20e-16

cellular protein metabolic process

2.20e-16

2

cytosolic large ribosomal subunit

2.20e-16

copper ion binding

2.20e-16

DNA replication

2.20e-16

3

ribosome

2.20e-16

aspartic-type endopeptidase activity

2.20e-16

response to cadmium ion

2.20e-16

4

ribonucleoprotein complex

2.20e-16

aspartate kinase activity

2.20e-16

DNA integration

2.20e-16

5

mitochondrial inner membrane

2.20e-16

DNA-directed DNA polymerase activity

2.20e-16

translation

2.20e-16

6

Golgi apparatus

2.20e-16

zinc ion binding

2.20e-16

cellular amino acid biosynthetic process

2.20e-16

7

cytosolic small ribosomal subunit

2.20e-16

ubiquitin thiolesterase activity

2.20e-16

microtubule-based movement

2.20e-16

8

nuclear pore

2.20e-16

microtubule motor activity

2.20e-16

cellular amino acid metabolic process

2.20e-16

9

mitochondrion

2.20e-16

triose-phosphate isomerase activity

2.20e-16

intracellular protein transport

2.20e-16

10

cytoplasm

2.20e-16

branched-chain-amino-acid transaminase activity

2.20e-16

protein import into nucleus, docking

2.20e-16

11

cytosol

2.20e-16

structural constituent of ribosome

2.20e-16

shoot development

2.20e-16

12

cytoskeleton

2.20e-16

nucleic acid binding

2.20e-16

proteolysis

2.20e-16

13

cytosolic ribosome

2.20e-16

translation initiation factor activity

2.20e-16

branched chain family amino acid metabolic process

2.20e-16

14

nucleolus

2.20e-16

DNA binding

2.20e-16

ubiquitin-dependent protein catabolic process

2.956e-16

15

plasma membrane

5.21E-015

glyceraldehyde-3-phosphate dehydrogenase activity

2.20e-16

embryo development ending in seed dormancy

1.114e-15

16

proteasome complex

1.09e-14

NAD binding

4.27E-015

vesicle-mediated transport

3.006e-15

17

COPI vesicle coat

1.20e-13

glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity

1.649e-14

rRNA processing

1.756e-14

18

outer membrane

1.39e-12

ligase activity

1.96e-14

translational elongation

2.675e-14

19

protein complex

1.43e-15

unfolded protein binding

2.25E-014

protein folding

4.47E-014

20

small ribosomal subunit

3.20e-12

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

2.67e-14

response to hormone stimulus

1.870e-13

  1. The top scoring 20 terms associated with three GO categories are given with their associated significance scores (p-value).
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BMC Genomics

ISSN: 1471-2164

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