Table 1 Pattern motifs for converted structures of sea anemone toxins obtained with SRDA("C.").
From: The mining of toxin-like polypeptides from EST database by single residue distribution analysis
| Â | Screening line | Number of seq. | Example (sequence ID) |
|---|---|---|---|
motif 1 | C1C##C6C#CC | 44 | Cangitoxin (P82803), AETX-1 (P69943) |
motif 2 | C1C##C9C#CC#. | 8 | BDS-II (P59084), APETx2 (P61542) |
motif 3 | C8C#C*C3C#C. | 8 | kaliseptin (Q9TWG1), ShK (P29187) |
motif 4 | C8C*C#C*C3C | 9 | AsKC1 (Q9TWG0), APHC1 (B2G331) |
motif 5 | C8C#C*C1C#C#. | 2 | SHTX-5 (B1B5J0), Gigantoxin-1 (BAD01579) |
motif 6 | CC#C#CC*C1C*C. | 2 | AETX-2 (P69944) |
motif 7 | CC1C*C*C*C*C1C#. | 1 | PA-TX (P09949) |
motif 8 | CC1C#C5C*C#. | 1 | Neurotoxin 3 (1ANS) |
motif 9 | C6C*C*C*C6C#. | 2 | acrorhagin II (BAE46983) |
motif 10 | C8C3C#C. | 1 | Metridin (P11495) |
motif 11 | C#C#C#C#C#C#C#C#. | 2 | Acrorhagin-1 (BAE46981) |
motif 12 | C6C#C#C1C*C1C | 3 | AvTX-60A (BAD04943), PsTX-60B (P58912) |
motif 13 | C#C#C#C#. | 1 | SHTX-1/SHTX-2 (P0C7W7) |
motif 0 | ###. | 18 | Equinatoxin II (P61915), Cytolysin-3 (Q9U6X1) |
motif 14 | ##C | 2 | Up-1 (P0C1G1), bandaporin (BAH80315) |
motif K | K > = 6 AND C < = 2 | Â | Â |
TOTAL | Â | 104 | Â |