Skip to main content

Table 3 Results obtained from A. viridis EST database at each stage of analysis.

From: The mining of toxin-like polypeptides from EST database by single residue distribution analysis

 

EST retrieved

Nr clones SignalP approved

blastp approved

Known structures found

motif 1

7

4

4

3

motif 2

51

13

13

1

motif 3

162

11

5

0

motif 4

211

16

16

3*

motif 5

26

2

2

-

motif 6

2

0

-

-

motif 7

10

0

-

-

motif 8

8

0

-

-

motif 9

59

2

2

-

motif 10

19

0

-

-

motif 11

81

5

-

-

motif 12

20

0

-

-

motif 13

5466

11

-

-

motif K

133

25

-

-

TOTAL

6222

89

42

7

  1. The total number of sequences found in the database by pattern search designated as "EST retrieved". The number of Non-redundant (Nr) mature sequences keeping signal peptide for secretion designated as "SignalP approved". BlastP approved sequences by blastp and PSI-BLAST algorithm shown identity to anemone toxins, and the number of 100% homologues structures are in the last column.
  2. * including truncated and long variants
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us