Table 2 Summary of the SNP to gene assignment
From: Exome localization of complex disease association signals
Protein-coding genes on chromosome 1-22 | 20,919 |
Protein-coding genes after SNP to gene assignment | 17,058 |
Protein-coding genes with SNP in transcribed regions | 13,783 |
Protein-coding genes with SNP in coding exon | 2,887 |
SNPs on chromosome 1-22 | 488,665 |
SNPs in transcribed regions | 194,831 |
SNPs 100 kb upstream or downstream of transcribed region | 151,984 |
SNPs in coding exons | 3,878 |
average gene length (whole transcript ± 1 s.d.) | 53,334 ± 112,931 |
average gene length of genes with SNP in transcribed region (whole transcript ± 1 s.d.) | 75,928 ± 132,938 |
average gene length (coding exons only ± 1 s.d.) | 1,747 ± 1,889 |
average gene length of genes with SNP in exon (coding exons only ± 1 s.d.) | 2,826 ± 3,339 |