Table 2 Biological implication of regulatory modules
From: Extracting regulatory modules from gene expression data by sequential pattern mining
GO-slim | SMD category | Calcium | Salt treatment | Mutants | Oxidative stress | RNA processing | Stress | DNA damage | Nutrient effects | Chemical effects | Chemostat | Starvation | Mutant vs Wild-type | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Response to stress | 154,651 | 142,140 | 28,467 | 16,889 | 23 | 3,230 | 527 | 462 | 29 | 2 | 18 | 0 | 346,438 | |
Carbohydrate metabolism | 15,360 | 19,295 | 19,747 | 1,534 | 0 | 1,545 | 156 | 6 | 196 | 18 | 0 | 5 | 57,862 | |
Generation of precursor metabolites and energy | 222 | 1,186 | 399 | 37 | 15,692 | 149 | 0 | 0 | 0 | 0 | 0 | 0 | 17,685 | |
Biological process unknown | 2,959 | 911 | 129 | 0 | 0 | 25 | 0 | 0 | 0 | 0 | 0 | 0 | 4,024 | |
Cell homeostasis | 0 | 0 | 0 | 514 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 514 | |
Cellular respiration | 0 | 0 | 1 | 13 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14 | |
Electron transport | 6 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 7 | |
Lipid metabolism | 0 | 1 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | |
Amino acid and derevative metabolism | 0 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | |
Sporulation | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | |
Total | 173,200 | 163,539 | 48,743 | 18,992 | 15,715 | 4,950 | 683 | 468 | 225 | 20 | 18 | 5 | 426,558 | |