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Table 2 Summary of docking results for the FFR models of WT, I16V, and I21T InhA enzyme from M. tuberculosis

From: Effect of the explicit flexibility of the InhA enzyme from Mycobacterium tuberculosis in molecular docking simulations

 

InhA_WT

InhA_I16T

InhA_I21V

 

A

B

C

D

A

B

C

D

A

B

C

D

 

Avg

-9.6

5.4

-9.1

4.1

-9.2

4.3

-8.7

3.3

-9.1

5.9

-8.6

3.3

 

SD

0.4

2.1

0.5

1.3

0.3

1.6

0.4

0.5

0.3

2.9

0.3

0.8

ETH

Min

-11.0

1.9

-10.9

1.4

-10.3

2.2

-10.2

1.7

-10.5

2.4

-9.6

1.7

 

Max

-8.4

14.9

-7.5

7.8

-8.2

12.9

-7.4

6.9

-8.4

14.9

-7.2

7.1

 

1ENY

-9.2

6.0

-8.5

1.8

--

--

--

--

--

--

--

--

 

Avg

-12.2

5.6

-10,5

4.3

-11.5

4.6

-10.8

3.3

-11.3

5.2

-10.3

3.2

 

SD

0.6

1.8

1.1

1.2

0.5

1.3

0.7

0.4

0.5

1.4

0.5

0.5

TCL

Min

-14.3

3.0

-13.5

2.2

-13.0

2.6

-12.7

2.1

-12.9

2.6

-12.0

1.7

 

Max

-8.1

14.9

-5.2

13.9

-10.0

10.1

-7.6

6.2

-9.5

9.5

-6.8

6.4

 

1ENY

-10.7

1.3

-10.6

1.3

--

--

--

--

--

--

--

--

 

Avg

-9.0

9.0

-6.5

6.0

-10.2

6.9

-8.3

5.3

-10.9

4.8

-8.7

3.5

PIF

SD

2.0

4.0

2.7

3.6

1.5

2.8

2.6

2.4

1.4

2.4

2.3

1.1

 

Min

-14.0

3.0

-13.6

2.4

-14.2

3.1

-14.1

2.9

-14.4

2.7

-14.0

2.4

 

Max

-1.0

20.0

0.0

16.3

-3.8

18.1

0.0

12.1

-5.0

17.0

-0.1

15.1

 

1ENY

-13.4

0.9

-13.5

0.3

--

--

--

--

--

--

--

--

  1. The first column indicates the ligands. The second column describes the statistics evaluated for each docking result: the average, standard deviation (SD), the minimum and maximum FEB values. Column 3 (A) contains the values of best FEB in kcal/mol and column 4 (B) its related RMSD in Ã…. Columns 5 (C) and 6 (D) show the FEB corresponding to the lowest RMSD calculated with respect to the reference ligand position (see Methods section). Columns 3-6 contain the results for InhA_wt. Columns 7-10 and 11-14 are the values of A, B, C and D for InhA_I16T and InhA_I21V mutants, respectively. The last row shows the results for the 1ENY rigid model.