Table 1 Summary of sequence read alignments to the reference genome
Sample | In vitro embryos | In vivo embryos |
|---|---|---|
Pair end reads | 26,906,451 x 2 | 38,184,547 x 2 |
Total sequenced fragments | 26,906,451 | 38,184,547 |
Total mapped fragments | 22,428,488 | 32,384,577 |
Uniquely mapped fragments | 20,389,330 | 29,728,363 |
Fragments mapped to autosomes and X chromosome | 19,556,926 | 28,362,794 |
Fragments mapped to annotated genes | 13,304,981 | 16,976,922 |
Fragments mapped to annotated exons | 6,942,761 | 8,185,094 |
Fragments overlapped with annotated introns | 6,362,220 | 8,791,828 |